Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.301.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.300.1 and Xcc-8004.301.1 are separated by 224 nucleotidesXcc-8004.301.1 and Xcc-8004.302.1 are separated by 124 nucleotides Xcc-8004.300.1: Xcc-8004.300.1 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 286,678 to 287,685 Xcc-8004.300.1 Xcc-8004.301.1: Xcc-8004.301.1 - Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5), at 287,910 to 290,078 Xcc-8004.301.1 Xcc-8004.302.1: Xcc-8004.302.1 - FIG01210109: hypothetical protein, at 290,203 to 292,362 Xcc-8004.302.1 Position (kb) 287 288 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 287.162 kb on - strand, within Xcc-8004.300.1at 287.319 kb on + strand, within Xcc-8004.300.1at 287.320 kb on - strand, within Xcc-8004.300.1at 287.392 kb on + strand, within Xcc-8004.300.1at 287.392 kb on + strand, within Xcc-8004.300.1at 287.392 kb on + strand, within Xcc-8004.300.1at 287.392 kb on + strand, within Xcc-8004.300.1at 287.392 kb on + strand, within Xcc-8004.300.1at 287.393 kb on - strand, within Xcc-8004.300.1at 287.393 kb on - strand, within Xcc-8004.300.1at 287.393 kb on - strand, within Xcc-8004.300.1at 287.393 kb on - strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.440 kb on + strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.441 kb on - strand, within Xcc-8004.300.1at 287.442 kb on + strand, within Xcc-8004.300.1at 287.442 kb on + strand, within Xcc-8004.300.1at 287.443 kb on - strand, within Xcc-8004.300.1at 287.444 kb on + strand, within Xcc-8004.300.1at 287.444 kb on + strand, within Xcc-8004.300.1at 287.444 kb on + strand, within Xcc-8004.300.1at 287.444 kb on + strand, within Xcc-8004.300.1at 287.444 kb on + strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.445 kb on - strand, within Xcc-8004.300.1at 287.461 kb on + strand, within Xcc-8004.300.1at 287.462 kb on - strand, within Xcc-8004.300.1at 287.485 kb on + strand, within Xcc-8004.300.1at 287.485 kb on + strand, within Xcc-8004.300.1at 287.486 kb on - strand, within Xcc-8004.300.1at 287.486 kb on - strand, within Xcc-8004.300.1at 287.620 kb on + strandat 287.621 kb on - strandat 287.705 kb on + strandat 287.738 kb on + strandat 287.739 kb on - strandat 288.017 kb on + strandat 288.391 kb on - strand, within Xcc-8004.301.1at 288.451 kb on - strand, within Xcc-8004.301.1at 288.451 kb on - strand, within Xcc-8004.301.1at 288.682 kb on - strand, within Xcc-8004.301.1at 288.682 kb on - strand, within Xcc-8004.301.1at 288.682 kb on - strand, within Xcc-8004.301.1at 288.874 kb on - strand, within Xcc-8004.301.1at 288.874 kb on - strand, within Xcc-8004.301.1at 288.874 kb on - strand, within Xcc-8004.301.1at 288.874 kb on - strand, within Xcc-8004.301.1at 289.050 kb on + strand, within Xcc-8004.301.1at 289.051 kb on - strand, within Xcc-8004.301.1at 289.077 kb on + strand, within Xcc-8004.301.1at 289.108 kb on - strand, within Xcc-8004.301.1at 289.164 kb on + strand, within Xcc-8004.301.1at 289.164 kb on + strand, within Xcc-8004.301.1at 289.164 kb on + strand, within Xcc-8004.301.1at 289.165 kb on - strand, within Xcc-8004.301.1at 289.165 kb on - strand, within Xcc-8004.301.1at 289.165 kb on - strand, within Xcc-8004.301.1at 289.203 kb on + strand, within Xcc-8004.301.1at 289.204 kb on - strand, within Xcc-8004.301.1at 289.224 kb on + strand, within Xcc-8004.301.1at 289.266 kb on + strand, within Xcc-8004.301.1at 289.275 kb on + strand, within Xcc-8004.301.1at 289.276 kb on - strand, within Xcc-8004.301.1at 289.362 kb on + strand, within Xcc-8004.301.1at 289.362 kb on + strand, within Xcc-8004.301.1at 289.485 kb on + strand, within Xcc-8004.301.1at 289.486 kb on - strand, within Xcc-8004.301.1at 289.584 kb on + strand, within Xcc-8004.301.1at 289.584 kb on + strand, within Xcc-8004.301.1at 289.585 kb on - strand, within Xcc-8004.301.1at 289.585 kb on - strand, within Xcc-8004.301.1at 289.585 kb on - strand, within Xcc-8004.301.1at 289.597 kb on - strand, within Xcc-8004.301.1at 289.684 kb on - strand, within Xcc-8004.301.1at 289.684 kb on - strand, within Xcc-8004.301.1at 289.828 kb on - strand, within Xcc-8004.301.1at 289.828 kb on - strand, within Xcc-8004.301.1at 289.828 kb on - strand, within Xcc-8004.301.1at 289.866 kb on + strandat 289.869 kb on + strandat 289.870 kb on - strandat 289.875 kb on + strandat 289.876 kb on - strandat 290.076 kb on + strandat 290.077 kb on - strandat 290.102 kb on + strandat 290.102 kb on + strandat 290.102 kb on + strandat 290.102 kb on + strandat 290.102 kb on + strandat 290.103 kb on - strandat 290.113 kb on - strandat 290.489 kb on - strand, within Xcc-8004.302.1at 290.580 kb on + strand, within Xcc-8004.302.1at 290.762 kb on + strand, within Xcc-8004.302.1at 290.763 kb on - strand, within Xcc-8004.302.1at 290.763 kb on - strand, within Xcc-8004.302.1at 290.763 kb on - strand, within Xcc-8004.302.1at 290.884 kb on + strand, within Xcc-8004.302.1at 290.885 kb on - strand, within Xcc-8004.302.1at 290.885 kb on - strand, within Xcc-8004.302.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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287,162 - Xcc-8004.300.1 0.48 +0.5
287,319 + Xcc-8004.300.1 0.64 +1.9
287,320 - Xcc-8004.300.1 0.64 +1.2
287,392 + Xcc-8004.300.1 0.71 -0.3
287,392 + Xcc-8004.300.1 0.71 -2.0
287,392 + Xcc-8004.300.1 0.71 +0.6
287,392 + Xcc-8004.300.1 0.71 -1.7
287,392 + Xcc-8004.300.1 0.71 -1.7
287,393 - Xcc-8004.300.1 0.71 -2.1
287,393 - Xcc-8004.300.1 0.71 +1.1
287,393 - Xcc-8004.300.1 0.71 +1.7
287,393 - Xcc-8004.300.1 0.71 +1.2
287,440 + Xcc-8004.300.1 0.76 +0.7
287,440 + Xcc-8004.300.1 0.76 +1.0
287,440 + Xcc-8004.300.1 0.76 +0.9
287,440 + Xcc-8004.300.1 0.76 +0.8
287,440 + Xcc-8004.300.1 0.76 -2.4
287,440 + Xcc-8004.300.1 0.76 -1.9
287,440 + Xcc-8004.300.1 0.76 -0.7
287,440 + Xcc-8004.300.1 0.76 +2.4
287,441 - Xcc-8004.300.1 0.76 +0.5
287,441 - Xcc-8004.300.1 0.76 -0.1
287,441 - Xcc-8004.300.1 0.76 -0.3
287,441 - Xcc-8004.300.1 0.76 -0.8
287,441 - Xcc-8004.300.1 0.76 -1.1
287,441 - Xcc-8004.300.1 0.76 -2.3
287,441 - Xcc-8004.300.1 0.76 +1.3
287,441 - Xcc-8004.300.1 0.76 +1.8
287,441 - Xcc-8004.300.1 0.76 -1.5
287,441 - Xcc-8004.300.1 0.76 +0.8
287,441 - Xcc-8004.300.1 0.76 +0.1
287,442 + Xcc-8004.300.1 0.76 -2.4
287,442 + Xcc-8004.300.1 0.76 +1.6
287,443 - Xcc-8004.300.1 0.76 -1.5
287,444 + Xcc-8004.300.1 0.76 -0.7
287,444 + Xcc-8004.300.1 0.76 +1.2
287,444 + Xcc-8004.300.1 0.76 -3.4
287,444 + Xcc-8004.300.1 0.76 +0.3
287,444 + Xcc-8004.300.1 0.76 +1.8
287,445 - Xcc-8004.300.1 0.76 +0.7
287,445 - Xcc-8004.300.1 0.76 -2.0
287,445 - Xcc-8004.300.1 0.76 -0.7
287,445 - Xcc-8004.300.1 0.76 -2.7
287,445 - Xcc-8004.300.1 0.76 +1.0
287,445 - Xcc-8004.300.1 0.76 -1.7
287,445 - Xcc-8004.300.1 0.76 -2.8
287,461 + Xcc-8004.300.1 0.78 +0.3
287,462 - Xcc-8004.300.1 0.78 +0.6
287,485 + Xcc-8004.300.1 0.80 -2.2
287,485 + Xcc-8004.300.1 0.80 +0.6
287,486 - Xcc-8004.300.1 0.80 -0.7
287,486 - Xcc-8004.300.1 0.80 +1.0
287,620 + -0.2
287,621 - -1.0
287,705 + +2.3
287,738 + +0.8
287,739 - -1.1
288,017 + -0.5
288,391 - Xcc-8004.301.1 0.22 -0.8
288,451 - Xcc-8004.301.1 0.25 +0.5
288,451 - Xcc-8004.301.1 0.25 +2.3
288,682 - Xcc-8004.301.1 0.36 +1.7
288,682 - Xcc-8004.301.1 0.36 -0.6
288,682 - Xcc-8004.301.1 0.36 -0.3
288,874 - Xcc-8004.301.1 0.44 +0.7
288,874 - Xcc-8004.301.1 0.44 +2.7
288,874 - Xcc-8004.301.1 0.44 +1.9
288,874 - Xcc-8004.301.1 0.44 +0.1
289,050 + Xcc-8004.301.1 0.53 +1.4
289,051 - Xcc-8004.301.1 0.53 +0.9
289,077 + Xcc-8004.301.1 0.54 -1.4
289,108 - Xcc-8004.301.1 0.55 +1.1
289,164 + Xcc-8004.301.1 0.58 +0.3
289,164 + Xcc-8004.301.1 0.58 +0.1
289,164 + Xcc-8004.301.1 0.58 +0.9
289,165 - Xcc-8004.301.1 0.58 -1.3
289,165 - Xcc-8004.301.1 0.58 -2.3
289,165 - Xcc-8004.301.1 0.58 +2.9
289,203 + Xcc-8004.301.1 0.60 +0.3
289,204 - Xcc-8004.301.1 0.60 -0.6
289,224 + Xcc-8004.301.1 0.61 +1.1
289,266 + Xcc-8004.301.1 0.63 -1.7
289,275 + Xcc-8004.301.1 0.63 +0.8
289,276 - Xcc-8004.301.1 0.63 +1.3
289,362 + Xcc-8004.301.1 0.67 -2.2
289,362 + Xcc-8004.301.1 0.67 -0.4
289,485 + Xcc-8004.301.1 0.73 +0.3
289,486 - Xcc-8004.301.1 0.73 +0.7
289,584 + Xcc-8004.301.1 0.77 +0.1
289,584 + Xcc-8004.301.1 0.77 -2.4
289,585 - Xcc-8004.301.1 0.77 -0.2
289,585 - Xcc-8004.301.1 0.77 -2.7
289,585 - Xcc-8004.301.1 0.77 +0.7
289,597 - Xcc-8004.301.1 0.78 -1.5
289,684 - Xcc-8004.301.1 0.82 -2.0
289,684 - Xcc-8004.301.1 0.82 +1.7
289,828 - Xcc-8004.301.1 0.88 -0.8
289,828 - Xcc-8004.301.1 0.88 -2.3
289,828 - Xcc-8004.301.1 0.88 +3.0
289,866 + -2.1
289,869 + +0.7
289,870 - -1.3
289,875 + -0.1
289,876 - -1.4
290,076 + -0.7
290,077 - +0.1
290,102 + -1.6
290,102 + +0.4
290,102 + -0.6
290,102 + -2.1
290,102 + -3.0
290,103 - +0.2
290,113 - -0.5
290,489 - Xcc-8004.302.1 0.13 +1.5
290,580 + Xcc-8004.302.1 0.17 -0.1
290,762 + Xcc-8004.302.1 0.26 -0.2
290,763 - Xcc-8004.302.1 0.26 +1.6
290,763 - Xcc-8004.302.1 0.26 +1.4
290,763 - Xcc-8004.302.1 0.26 +0.5
290,884 + Xcc-8004.302.1 0.32 -0.7
290,885 - Xcc-8004.302.1 0.32 -0.3
290,885 - Xcc-8004.302.1 0.32 +0.8

Or see this region's nucleotide sequence