Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2707.1 and Xcc-8004.2708.1 are separated by 56 nucleotides Xcc-8004.2708.1 and Xcc-8004.2709.1 are separated by 33 nucleotides Xcc-8004.2709.1 and Xcc-8004.2710.1 are separated by 36 nucleotides
Xcc-8004.2707.1: Xcc-8004.2707.1 - Homoserine dehydrogenase (EC 1.1.1.3), at 2,616,916 to 2,618,214
Xcc-8004.2707.1
Xcc-8004.2708.1: Xcc-8004.2708.1 - Exopolysaccharide production protein ExoZ, at 2,618,271 to 2,619,356
Xcc-8004.2708.1
Xcc-8004.2709.1: Xcc-8004.2709.1 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 2,619,390 to 2,620,166
Xcc-8004.2709.1
Xcc-8004.2710.1: Xcc-8004.2710.1 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 2,620,203 to 2,623,001
Xcc-8004.2710.1
Position (kb) 2618
2619
2620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2617.639 kb on + strand, within Xcc-8004.2707.1 at 2617.679 kb on - strand, within Xcc-8004.2707.1 at 2617.720 kb on + strand, within Xcc-8004.2707.1 at 2617.720 kb on + strand, within Xcc-8004.2707.1 at 2617.721 kb on - strand, within Xcc-8004.2707.1 at 2617.721 kb on - strand, within Xcc-8004.2707.1 at 2617.721 kb on - strand, within Xcc-8004.2707.1 at 2617.792 kb on + strand, within Xcc-8004.2707.1 at 2617.792 kb on + strand, within Xcc-8004.2707.1 at 2617.792 kb on + strand, within Xcc-8004.2707.1 at 2617.793 kb on - strand, within Xcc-8004.2707.1 at 2617.793 kb on - strand, within Xcc-8004.2707.1 at 2617.804 kb on + strand, within Xcc-8004.2707.1 at 2617.828 kb on + strand, within Xcc-8004.2707.1 at 2617.829 kb on - strand, within Xcc-8004.2707.1 at 2617.829 kb on - strand, within Xcc-8004.2707.1 at 2617.829 kb on - strand, within Xcc-8004.2707.1 at 2617.829 kb on - strand, within Xcc-8004.2707.1 at 2617.829 kb on - strand, within Xcc-8004.2707.1 at 2617.837 kb on + strand, within Xcc-8004.2707.1 at 2617.837 kb on + strand, within Xcc-8004.2707.1 at 2617.838 kb on - strand, within Xcc-8004.2707.1 at 2617.838 kb on - strand, within Xcc-8004.2707.1 at 2617.838 kb on - strand, within Xcc-8004.2707.1 at 2617.846 kb on + strand, within Xcc-8004.2707.1 at 2617.847 kb on - strand, within Xcc-8004.2707.1 at 2618.002 kb on + strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.003 kb on - strand, within Xcc-8004.2707.1 at 2618.011 kb on + strand, within Xcc-8004.2707.1 at 2618.011 kb on + strand, within Xcc-8004.2707.1 at 2618.012 kb on - strand, within Xcc-8004.2707.1 at 2618.114 kb on + strand at 2618.114 kb on + strand at 2618.114 kb on + strand at 2618.115 kb on - strand at 2618.122 kb on + strand at 2618.122 kb on + strand at 2618.123 kb on - strand at 2618.123 kb on - strand at 2618.123 kb on - strand at 2618.369 kb on + strand at 2618.369 kb on + strand at 2618.370 kb on - strand at 2618.424 kb on + strand, within Xcc-8004.2708.1 at 2618.424 kb on + strand, within Xcc-8004.2708.1 at 2618.424 kb on + strand, within Xcc-8004.2708.1 at 2618.424 kb on + strand, within Xcc-8004.2708.1 at 2618.425 kb on - strand, within Xcc-8004.2708.1 at 2618.469 kb on + strand, within Xcc-8004.2708.1 at 2618.469 kb on + strand, within Xcc-8004.2708.1 at 2618.469 kb on + strand, within Xcc-8004.2708.1 at 2618.469 kb on + strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.470 kb on - strand, within Xcc-8004.2708.1 at 2618.472 kb on + strand, within Xcc-8004.2708.1 at 2618.472 kb on + strand, within Xcc-8004.2708.1 at 2618.472 kb on + strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.473 kb on - strand, within Xcc-8004.2708.1 at 2618.517 kb on + strand, within Xcc-8004.2708.1 at 2618.517 kb on + strand, within Xcc-8004.2708.1 at 2618.517 kb on + strand, within Xcc-8004.2708.1 at 2618.517 kb on + strand, within Xcc-8004.2708.1 at 2618.517 kb on + strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.518 kb on - strand, within Xcc-8004.2708.1 at 2618.544 kb on + strand, within Xcc-8004.2708.1 at 2618.544 kb on + strand, within Xcc-8004.2708.1 at 2618.544 kb on + strand, within Xcc-8004.2708.1 at 2618.545 kb on - strand, within Xcc-8004.2708.1 at 2618.545 kb on - strand, within Xcc-8004.2708.1 at 2618.545 kb on - strand, within Xcc-8004.2708.1 at 2618.586 kb on + strand, within Xcc-8004.2708.1 at 2618.586 kb on + strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.587 kb on - strand, within Xcc-8004.2708.1 at 2618.715 kb on + strand, within Xcc-8004.2708.1 at 2618.715 kb on + strand, within Xcc-8004.2708.1 at 2618.716 kb on - strand, within Xcc-8004.2708.1 at 2618.716 kb on - strand, within Xcc-8004.2708.1 at 2618.716 kb on - strand, within Xcc-8004.2708.1 at 2618.793 kb on + strand, within Xcc-8004.2708.1 at 2618.793 kb on + strand, within Xcc-8004.2708.1 at 2618.793 kb on + strand, within Xcc-8004.2708.1 at 2618.793 kb on + strand, within Xcc-8004.2708.1 at 2618.794 kb on - strand, within Xcc-8004.2708.1 at 2618.794 kb on - strand, within Xcc-8004.2708.1 at 2618.794 kb on - strand, within Xcc-8004.2708.1 at 2619.163 kb on - strand, within Xcc-8004.2708.1 at 2619.163 kb on - strand, within Xcc-8004.2708.1 at 2619.163 kb on - strand, within Xcc-8004.2708.1 at 2619.171 kb on + strand, within Xcc-8004.2708.1 at 2619.171 kb on + strand, within Xcc-8004.2708.1 at 2619.171 kb on + strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.172 kb on - strand, within Xcc-8004.2708.1 at 2619.279 kb on - strand at 2619.306 kb on + strand at 2619.307 kb on - strand at 2619.354 kb on + strand at 2619.365 kb on + strand at 2619.365 kb on + strand at 2619.365 kb on + strand at 2619.365 kb on + strand at 2619.365 kb on + strand at 2619.366 kb on - strand at 2619.366 kb on - strand at 2619.366 kb on - strand at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.649 kb on + strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.650 kb on - strand, within Xcc-8004.2709.1 at 2619.713 kb on + strand, within Xcc-8004.2709.1 at 2619.713 kb on + strand, within Xcc-8004.2709.1 at 2619.713 kb on + strand, within Xcc-8004.2709.1 at 2619.714 kb on - strand, within Xcc-8004.2709.1 at 2619.714 kb on - strand, within Xcc-8004.2709.1 at 2619.714 kb on - strand, within Xcc-8004.2709.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 2,617,639 + Xcc-8004.2707.1 0.56 -1.3 2,617,679 - Xcc-8004.2707.1 0.59 -0.2 2,617,720 + Xcc-8004.2707.1 0.62 +1.5 2,617,720 + Xcc-8004.2707.1 0.62 +1.9 2,617,721 - Xcc-8004.2707.1 0.62 +0.2 2,617,721 - Xcc-8004.2707.1 0.62 +1.7 2,617,721 - Xcc-8004.2707.1 0.62 +0.7 2,617,792 + Xcc-8004.2707.1 0.67 -0.6 2,617,792 + Xcc-8004.2707.1 0.67 -0.6 2,617,792 + Xcc-8004.2707.1 0.67 +1.0 2,617,793 - Xcc-8004.2707.1 0.68 +2.0 2,617,793 - Xcc-8004.2707.1 0.68 -1.1 2,617,804 + Xcc-8004.2707.1 0.68 -0.8 2,617,828 + Xcc-8004.2707.1 0.70 +1.1 2,617,829 - Xcc-8004.2707.1 0.70 +1.3 2,617,829 - Xcc-8004.2707.1 0.70 +1.9 2,617,829 - Xcc-8004.2707.1 0.70 -0.7 2,617,829 - Xcc-8004.2707.1 0.70 -1.1 2,617,829 - Xcc-8004.2707.1 0.70 -0.4 2,617,837 + Xcc-8004.2707.1 0.71 -1.8 2,617,837 + Xcc-8004.2707.1 0.71 +0.5 2,617,838 - Xcc-8004.2707.1 0.71 -0.4 2,617,838 - Xcc-8004.2707.1 0.71 -2.1 2,617,838 - Xcc-8004.2707.1 0.71 -0.7 2,617,846 + Xcc-8004.2707.1 0.72 -0.4 2,617,847 - Xcc-8004.2707.1 0.72 -1.3 2,618,002 + Xcc-8004.2707.1 0.84 +0.0 2,618,003 - Xcc-8004.2707.1 0.84 +1.7 2,618,003 - Xcc-8004.2707.1 0.84 +1.2 2,618,003 - Xcc-8004.2707.1 0.84 +1.9 2,618,003 - Xcc-8004.2707.1 0.84 -2.2 2,618,003 - Xcc-8004.2707.1 0.84 +2.0 2,618,003 - Xcc-8004.2707.1 0.84 +0.8 2,618,011 + Xcc-8004.2707.1 0.84 +0.1 2,618,011 + Xcc-8004.2707.1 0.84 +0.9 2,618,012 - Xcc-8004.2707.1 0.84 +0.8 2,618,114 + -1.8 2,618,114 + -2.7 2,618,114 + -2.1 2,618,115 - -1.4 2,618,122 + +1.6 2,618,122 + +0.6 2,618,123 - -0.3 2,618,123 - -0.2 2,618,123 - -1.7 2,618,369 + +1.6 2,618,369 + -1.5 2,618,370 - -0.7 2,618,424 + Xcc-8004.2708.1 0.14 +1.3 2,618,424 + Xcc-8004.2708.1 0.14 +0.3 2,618,424 + Xcc-8004.2708.1 0.14 +1.8 2,618,424 + Xcc-8004.2708.1 0.14 +2.1 2,618,425 - Xcc-8004.2708.1 0.14 -0.4 2,618,469 + Xcc-8004.2708.1 0.18 -0.2 2,618,469 + Xcc-8004.2708.1 0.18 +0.7 2,618,469 + Xcc-8004.2708.1 0.18 +0.2 2,618,469 + Xcc-8004.2708.1 0.18 -0.6 2,618,470 - Xcc-8004.2708.1 0.18 +2.4 2,618,470 - Xcc-8004.2708.1 0.18 +0.2 2,618,470 - Xcc-8004.2708.1 0.18 +1.0 2,618,470 - Xcc-8004.2708.1 0.18 +1.2 2,618,470 - Xcc-8004.2708.1 0.18 +1.5 2,618,470 - Xcc-8004.2708.1 0.18 +1.1 2,618,472 + Xcc-8004.2708.1 0.19 +2.4 2,618,472 + Xcc-8004.2708.1 0.19 +0.0 2,618,472 + Xcc-8004.2708.1 0.19 -1.9 2,618,473 - Xcc-8004.2708.1 0.19 -0.7 2,618,473 - Xcc-8004.2708.1 0.19 +1.5 2,618,473 - Xcc-8004.2708.1 0.19 -0.4 2,618,473 - Xcc-8004.2708.1 0.19 +1.9 2,618,473 - Xcc-8004.2708.1 0.19 -2.7 2,618,473 - Xcc-8004.2708.1 0.19 +0.4 2,618,517 + Xcc-8004.2708.1 0.23 -1.9 2,618,517 + Xcc-8004.2708.1 0.23 +1.1 2,618,517 + Xcc-8004.2708.1 0.23 -0.0 2,618,517 + Xcc-8004.2708.1 0.23 +1.5 2,618,517 + Xcc-8004.2708.1 0.23 +1.3 2,618,518 - Xcc-8004.2708.1 0.23 -0.6 2,618,518 - Xcc-8004.2708.1 0.23 -2.2 2,618,518 - Xcc-8004.2708.1 0.23 -0.3 2,618,518 - Xcc-8004.2708.1 0.23 -0.5 2,618,518 - Xcc-8004.2708.1 0.23 +1.4 2,618,518 - Xcc-8004.2708.1 0.23 -1.7 2,618,518 - Xcc-8004.2708.1 0.23 -1.3 2,618,518 - Xcc-8004.2708.1 0.23 -0.2 2,618,518 - Xcc-8004.2708.1 0.23 +0.5 2,618,518 - Xcc-8004.2708.1 0.23 +0.6 2,618,544 + Xcc-8004.2708.1 0.25 -0.6 2,618,544 + Xcc-8004.2708.1 0.25 -1.9 2,618,544 + Xcc-8004.2708.1 0.25 -0.4 2,618,545 - Xcc-8004.2708.1 0.25 -1.7 2,618,545 - Xcc-8004.2708.1 0.25 +1.9 2,618,545 - Xcc-8004.2708.1 0.25 -0.2 2,618,586 + Xcc-8004.2708.1 0.29 +0.2 2,618,586 + Xcc-8004.2708.1 0.29 -2.0 2,618,587 - Xcc-8004.2708.1 0.29 -1.0 2,618,587 - Xcc-8004.2708.1 0.29 -0.6 2,618,587 - Xcc-8004.2708.1 0.29 +1.3 2,618,587 - Xcc-8004.2708.1 0.29 -0.4 2,618,587 - Xcc-8004.2708.1 0.29 -1.9 2,618,587 - Xcc-8004.2708.1 0.29 +0.5 2,618,715 + Xcc-8004.2708.1 0.41 +1.3 2,618,715 + Xcc-8004.2708.1 0.41 +0.0 2,618,716 - Xcc-8004.2708.1 0.41 -1.4 2,618,716 - Xcc-8004.2708.1 0.41 +1.1 2,618,716 - Xcc-8004.2708.1 0.41 -2.3 2,618,793 + Xcc-8004.2708.1 0.48 +1.6 2,618,793 + Xcc-8004.2708.1 0.48 +2.4 2,618,793 + Xcc-8004.2708.1 0.48 -0.8 2,618,793 + Xcc-8004.2708.1 0.48 +0.8 2,618,794 - Xcc-8004.2708.1 0.48 -0.2 2,618,794 - Xcc-8004.2708.1 0.48 -2.4 2,618,794 - Xcc-8004.2708.1 0.48 -0.3 2,619,163 - Xcc-8004.2708.1 0.82 +1.3 2,619,163 - Xcc-8004.2708.1 0.82 -3.0 2,619,163 - Xcc-8004.2708.1 0.82 +1.0 2,619,171 + Xcc-8004.2708.1 0.83 -2.6 2,619,171 + Xcc-8004.2708.1 0.83 -1.2 2,619,171 + Xcc-8004.2708.1 0.83 -0.4 2,619,172 - Xcc-8004.2708.1 0.83 +1.7 2,619,172 - Xcc-8004.2708.1 0.83 -2.5 2,619,172 - Xcc-8004.2708.1 0.83 +0.5 2,619,172 - Xcc-8004.2708.1 0.83 -0.0 2,619,172 - Xcc-8004.2708.1 0.83 -0.5 2,619,172 - Xcc-8004.2708.1 0.83 +1.7 2,619,172 - Xcc-8004.2708.1 0.83 -1.0 2,619,279 - -0.6 2,619,306 + -1.9 2,619,307 - +1.9 2,619,354 + +1.1 2,619,365 + +0.3 2,619,365 + -1.3 2,619,365 + -1.7 2,619,365 + -0.3 2,619,365 + +1.0 2,619,366 - -2.4 2,619,366 - -1.2 2,619,366 - +1.5 2,619,649 + Xcc-8004.2709.1 0.33 +1.7 2,619,649 + Xcc-8004.2709.1 0.33 +1.1 2,619,649 + Xcc-8004.2709.1 0.33 -2.1 2,619,649 + Xcc-8004.2709.1 0.33 +0.2 2,619,649 + Xcc-8004.2709.1 0.33 +0.4 2,619,649 + Xcc-8004.2709.1 0.33 +0.1 2,619,649 + Xcc-8004.2709.1 0.33 -1.7 2,619,649 + Xcc-8004.2709.1 0.33 -0.1 2,619,649 + Xcc-8004.2709.1 0.33 +1.6 2,619,649 + Xcc-8004.2709.1 0.33 -1.4 2,619,649 + Xcc-8004.2709.1 0.33 +0.8 2,619,649 + Xcc-8004.2709.1 0.33 +0.1 2,619,649 + Xcc-8004.2709.1 0.33 +0.5 2,619,650 - Xcc-8004.2709.1 0.33 -0.9 2,619,650 - Xcc-8004.2709.1 0.33 +0.4 2,619,650 - Xcc-8004.2709.1 0.33 +1.3 2,619,650 - Xcc-8004.2709.1 0.33 +0.4 2,619,650 - Xcc-8004.2709.1 0.33 +0.9 2,619,650 - Xcc-8004.2709.1 0.33 +0.5 2,619,650 - Xcc-8004.2709.1 0.33 -2.3 2,619,650 - Xcc-8004.2709.1 0.33 -0.3 2,619,713 + Xcc-8004.2709.1 0.42 +0.1 2,619,713 + Xcc-8004.2709.1 0.42 -1.7 2,619,713 + Xcc-8004.2709.1 0.42 -1.4 2,619,714 - Xcc-8004.2709.1 0.42 -2.7 2,619,714 - Xcc-8004.2709.1 0.42 -1.4 2,619,714 - Xcc-8004.2709.1 0.42 -1.2
Or see this region's nucleotide sequence