Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.234.1 and Xcc-8004.235.1 are separated by 270 nucleotides Xcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotides Xcc-8004.236.1 and Xcc-8004.237.1 are separated by 54 nucleotides
Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652
Xcc-8004.234.1
Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351
Xcc-8004.235.1
Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271
Xcc-8004.236.1
Xcc-8004.237.1: Xcc-8004.237.1 - FIG01211085: hypothetical protein, at 234,326 to 235,312
Xcc-8004.237.1
Position (kb) 232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 231.933 kb on + strand, within Xcc-8004.234.1 at 231.934 kb on - strand, within Xcc-8004.234.1 at 232.044 kb on - strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.414 kb on - strand, within Xcc-8004.234.1 at 232.482 kb on + strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 233.052 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.147 kb on + strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.528 kb on + strand at 233.529 kb on - strand at 233.529 kb on - strand at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days remove 231,933 + Xcc-8004.234.1 0.64 +0.7 231,934 - Xcc-8004.234.1 0.64 +0.4 232,044 - Xcc-8004.234.1 0.69 +2.3 232,272 + Xcc-8004.234.1 0.81 +1.5 232,272 + Xcc-8004.234.1 0.81 -1.3 232,272 + Xcc-8004.234.1 0.81 -2.6 232,272 + Xcc-8004.234.1 0.81 +1.5 232,272 + Xcc-8004.234.1 0.81 -1.3 232,272 + Xcc-8004.234.1 0.81 +0.7 232,273 - Xcc-8004.234.1 0.81 +2.2 232,273 - Xcc-8004.234.1 0.81 +0.3 232,273 - Xcc-8004.234.1 0.81 +3.1 232,273 - Xcc-8004.234.1 0.81 -1.4 232,413 + Xcc-8004.234.1 0.88 -0.5 232,413 + Xcc-8004.234.1 0.88 +1.0 232,413 + Xcc-8004.234.1 0.88 -2.1 232,414 - Xcc-8004.234.1 0.88 +1.1 232,482 + -2.5 232,483 - +2.3 232,483 - -1.0 232,483 - +1.3 232,551 + -2.3 232,551 + -1.7 232,551 + -0.4 232,551 + -0.8 232,551 + -3.4 232,551 + +0.7 232,551 + +1.3 232,551 + +2.1 232,552 - -2.1 232,552 - +0.7 232,552 - -1.3 232,552 - -2.0 232,552 - -1.4 232,552 - +1.7 232,552 - -1.3 232,552 - -1.0 232,552 - -0.5 232,676 + +0.4 232,676 + -0.8 232,676 + +0.6 232,677 - -0.3 232,677 - -1.8 232,677 - +1.5 232,833 - -0.8 232,833 - -0.5 232,833 - -1.0 232,833 - +1.4 232,833 - +0.2 232,833 - -0.7 232,833 - +1.5 233,052 - Xcc-8004.235.1 0.30 -1.0 233,071 - Xcc-8004.235.1 0.34 +0.5 233,071 - Xcc-8004.235.1 0.34 +1.6 233,147 + Xcc-8004.235.1 0.52 -1.6 233,148 - Xcc-8004.235.1 0.52 +0.0 233,148 - Xcc-8004.235.1 0.52 -1.4 233,148 - Xcc-8004.235.1 0.52 -2.1 233,428 + -0.9 233,428 + -2.1 233,428 + +2.0 233,428 + -0.3 233,428 + +0.1 233,428 + +1.2 233,428 + +0.9 233,429 - -2.1 233,429 - +0.0 233,429 - -3.0 233,528 + -0.6 233,529 - -0.5 233,529 - -2.7 234,133 + Xcc-8004.236.1 0.83 -1.5 234,133 + Xcc-8004.236.1 0.83 -1.5 234,134 - Xcc-8004.236.1 0.83 -1.6 234,134 - Xcc-8004.236.1 0.83 +0.8 234,342 - -0.9 234,342 - +0.3 234,342 - +1.7 234,342 - +0.3
Or see this region's nucleotide sequence