Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.186.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.185.1 and Xcc-8004.186.1 overlap by 1 nucleotidesXcc-8004.186.1 and Xcc-8004.187.1 are separated by 72 nucleotidesXcc-8004.187.1 and Xcc-8004.188.1 overlap by 101 nucleotidesXcc-8004.188.1 and Xcc-8004.189.1 overlap by 4 nucleotides Xcc-8004.185.1: Xcc-8004.185.1 - Trehalose synthase (EC 5.4.99.16), at 178,144 to 181,494 Xcc-8004.185.1 Xcc-8004.186.1: Xcc-8004.186.1 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 181,494 to 183,689 Xcc-8004.186.1 Xcc-8004.187.1: Xcc-8004.187.1 - Mobile element protein, at 183,762 to 184,280 Xcc-8004.187.1 Xcc-8004.188.1: Xcc-8004.188.1 - Mobile element protein, at 184,180 to 184,344 Xcc-8004.188.1 Xcc-8004.189.1: Xcc-8004.189.1 - Mobile element protein, at 184,341 to 184,532 Xcc-8004.189.1 Position (kb) 181 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.664 kb on + strand, within Xcc-8004.185.1at 180.664 kb on + strand, within Xcc-8004.185.1at 180.665 kb on - strand, within Xcc-8004.185.1at 180.807 kb on + strand, within Xcc-8004.185.1at 181.166 kb on - strandat 181.294 kb on + strandat 181.294 kb on + strandat 181.295 kb on - strandat 181.387 kb on + strandat 181.388 kb on - strandat 181.400 kb on - strandat 181.400 kb on - strandat 181.504 kb on + strandat 181.504 kb on + strandat 181.504 kb on + strandat 181.505 kb on - strandat 181.505 kb on - strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.629 kb on + strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.630 kb on - strandat 181.681 kb on + strandat 181.682 kb on - strandat 181.795 kb on - strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.957 kb on + strand, within Xcc-8004.186.1at 181.970 kb on + strand, within Xcc-8004.186.1at 181.971 kb on - strand, within Xcc-8004.186.1at 182.061 kb on + strand, within Xcc-8004.186.1at 182.062 kb on - strand, within Xcc-8004.186.1at 182.067 kb on + strand, within Xcc-8004.186.1at 182.067 kb on + strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.068 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.251 kb on - strand, within Xcc-8004.186.1at 182.406 kb on + strand, within Xcc-8004.186.1at 182.577 kb on + strand, within Xcc-8004.186.1at 182.577 kb on + strand, within Xcc-8004.186.1at 182.621 kb on + strand, within Xcc-8004.186.1at 182.621 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.631 kb on + strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.632 kb on - strand, within Xcc-8004.186.1at 182.742 kb on + strand, within Xcc-8004.186.1at 182.743 kb on - strand, within Xcc-8004.186.1at 182.751 kb on + strand, within Xcc-8004.186.1at 182.751 kb on + strand, within Xcc-8004.186.1at 182.943 kb on + strand, within Xcc-8004.186.1at 182.943 kb on + strand, within Xcc-8004.186.1at 182.944 kb on - strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.982 kb on + strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 182.983 kb on - strand, within Xcc-8004.186.1at 183.003 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.045 kb on + strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.046 kb on - strand, within Xcc-8004.186.1at 183.051 kb on + strand, within Xcc-8004.186.1at 183.340 kb on - strand, within Xcc-8004.186.1at 183.474 kb on + strandat 183.474 kb on + strandat 183.474 kb on + strandat 183.474 kb on + strandat 183.561 kb on + strandat 183.561 kb on + strandat 183.738 kb on + strandat 183.739 kb on - strandat 183.739 kb on - strandat 183.739 kb on - strandat 183.753 kb on - strandat 183.753 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.778 kb on - strandat 183.781 kb on - strandat 184.354 kb on + strandat 184.355 kb on - strandat 184.355 kb on - strandat 184.427 kb on - strand, within Xcc-8004.189.1at 184.603 kb on + strandat 184.616 kb on - strandat 184.622 kb on + strandat 184.623 kb on - strandat 184.623 kb on - strandat 184.670 kb on + strandat 184.670 kb on + strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.671 kb on - strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.678 kb on + strandat 184.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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180,664 + Xcc-8004.185.1 0.75 +0.7
180,664 + Xcc-8004.185.1 0.75 +0.5
180,665 - Xcc-8004.185.1 0.75 -0.8
180,807 + Xcc-8004.185.1 0.79 -3.2
181,166 - -2.4
181,294 + -1.2
181,294 + -0.4
181,295 - -0.0
181,387 + -1.5
181,388 - -1.9
181,400 - -1.4
181,400 - -0.5
181,504 + +0.6
181,504 + -0.6
181,504 + -1.1
181,505 - +1.2
181,505 - +1.3
181,629 + +0.9
181,629 + -1.3
181,629 + -1.8
181,629 + -3.3
181,629 + +0.8
181,629 + -2.3
181,630 - -1.9
181,630 - -1.3
181,630 - -3.3
181,630 - -0.1
181,630 - -0.2
181,630 - -3.7
181,630 - -2.1
181,681 + -2.0
181,682 - -0.8
181,795 - Xcc-8004.186.1 0.14 +1.0
181,957 + Xcc-8004.186.1 0.21 -0.9
181,957 + Xcc-8004.186.1 0.21 +2.4
181,957 + Xcc-8004.186.1 0.21 +0.3
181,970 + Xcc-8004.186.1 0.22 +0.0
181,971 - Xcc-8004.186.1 0.22 +1.9
182,061 + Xcc-8004.186.1 0.26 +0.4
182,062 - Xcc-8004.186.1 0.26 -1.0
182,067 + Xcc-8004.186.1 0.26 -2.9
182,067 + Xcc-8004.186.1 0.26 -1.7
182,068 - Xcc-8004.186.1 0.26 -1.4
182,068 - Xcc-8004.186.1 0.26 -3.6
182,068 - Xcc-8004.186.1 0.26 -0.2
182,251 - Xcc-8004.186.1 0.34 -1.5
182,251 - Xcc-8004.186.1 0.34 -0.7
182,251 - Xcc-8004.186.1 0.34 +0.5
182,251 - Xcc-8004.186.1 0.34 -0.4
182,406 + Xcc-8004.186.1 0.42 -0.5
182,577 + Xcc-8004.186.1 0.49 -0.7
182,577 + Xcc-8004.186.1 0.49 +0.4
182,621 + Xcc-8004.186.1 0.51 -0.4
182,621 + Xcc-8004.186.1 0.51 -0.3
182,631 + Xcc-8004.186.1 0.52 -1.0
182,631 + Xcc-8004.186.1 0.52 +0.8
182,631 + Xcc-8004.186.1 0.52 +1.2
182,631 + Xcc-8004.186.1 0.52 +0.2
182,632 - Xcc-8004.186.1 0.52 -0.4
182,632 - Xcc-8004.186.1 0.52 +1.1
182,632 - Xcc-8004.186.1 0.52 +1.0
182,632 - Xcc-8004.186.1 0.52 -2.0
182,632 - Xcc-8004.186.1 0.52 +0.2
182,742 + Xcc-8004.186.1 0.57 +0.1
182,743 - Xcc-8004.186.1 0.57 +1.7
182,751 + Xcc-8004.186.1 0.57 -1.6
182,751 + Xcc-8004.186.1 0.57 +0.2
182,943 + Xcc-8004.186.1 0.66 -0.4
182,943 + Xcc-8004.186.1 0.66 -1.4
182,944 - Xcc-8004.186.1 0.66 -3.0
182,982 + Xcc-8004.186.1 0.68 +1.3
182,982 + Xcc-8004.186.1 0.68 -1.0
182,982 + Xcc-8004.186.1 0.68 +0.9
182,982 + Xcc-8004.186.1 0.68 -0.9
182,983 - Xcc-8004.186.1 0.68 -0.6
182,983 - Xcc-8004.186.1 0.68 +0.2
182,983 - Xcc-8004.186.1 0.68 -2.1
182,983 - Xcc-8004.186.1 0.68 -1.6
182,983 - Xcc-8004.186.1 0.68 -0.2
183,003 + Xcc-8004.186.1 0.69 +0.5
183,045 + Xcc-8004.186.1 0.71 -0.8
183,045 + Xcc-8004.186.1 0.71 -1.2
183,045 + Xcc-8004.186.1 0.71 -1.1
183,045 + Xcc-8004.186.1 0.71 -0.9
183,046 - Xcc-8004.186.1 0.71 -2.3
183,046 - Xcc-8004.186.1 0.71 -0.3
183,046 - Xcc-8004.186.1 0.71 +1.3
183,046 - Xcc-8004.186.1 0.71 +0.9
183,046 - Xcc-8004.186.1 0.71 +0.9
183,051 + Xcc-8004.186.1 0.71 +1.2
183,340 - Xcc-8004.186.1 0.84 +0.4
183,474 + -0.1
183,474 + +0.7
183,474 + -0.7
183,474 + +0.7
183,561 + +1.0
183,561 + -0.3
183,738 + +0.6
183,739 - +0.4
183,739 - +0.9
183,739 - +0.7
183,753 - -1.9
183,753 - -0.1
183,778 - -2.5
183,778 - -1.1
183,778 - -2.5
183,778 - -0.2
183,781 - +1.6
184,354 + -0.8
184,355 - +1.3
184,355 - -3.3
184,427 - Xcc-8004.189.1 0.45 +1.3
184,603 + -1.9
184,616 - -0.0
184,622 + +1.6
184,623 - +2.7
184,623 - +0.2
184,670 + +0.0
184,670 + -2.3
184,671 - -0.5
184,671 - -0.7
184,671 - +1.1
184,678 + +1.2
184,678 + +1.1
184,678 + +1.3
184,678 + +1.3
184,679 - -1.4

Or see this region's nucleotide sequence