Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1740.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1737.1 and Xcc-8004.1739.1 are separated by 461 nucleotidesXcc-8004.1739.1 and Xcc-8004.1740.1 are separated by 127 nucleotidesXcc-8004.1740.1 and Xcc-8004.1741.1 are separated by 317 nucleotides Xcc-8004.1737.1: Xcc-8004.1737.1 - McrBC 5-methylcytosine restriction system component, at 1,668,299 to 1,669,615 Xcc-8004.1737.1 Xcc-8004.1739.1: Xcc-8004.1739.1 - two-component system sensor protein, at 1,670,077 to 1,670,217 Xcc-8004.1739.1 Xcc-8004.1740.1: Xcc-8004.1740.1 - response regulator, at 1,670,345 to 1,671,829 Xcc-8004.1740.1 Xcc-8004.1741.1: Xcc-8004.1741.1 - Alcohol dehydrogenase (EC 1.1.1.1), at 1,672,147 to 1,673,154 Xcc-8004.1741.1 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1669.376 kb on + strand, within Xcc-8004.1737.1at 1669.376 kb on + strand, within Xcc-8004.1737.1at 1669.376 kb on + strand, within Xcc-8004.1737.1at 1669.376 kb on + strand, within Xcc-8004.1737.1at 1669.377 kb on - strand, within Xcc-8004.1737.1at 1669.377 kb on - strand, within Xcc-8004.1737.1at 1669.401 kb on - strand, within Xcc-8004.1737.1at 1669.401 kb on - strand, within Xcc-8004.1737.1at 1669.408 kb on - strand, within Xcc-8004.1737.1at 1669.416 kb on - strand, within Xcc-8004.1737.1at 1669.427 kb on + strand, within Xcc-8004.1737.1at 1669.428 kb on - strand, within Xcc-8004.1737.1at 1669.460 kb on + strand, within Xcc-8004.1737.1at 1669.461 kb on - strand, within Xcc-8004.1737.1at 1669.505 kb on + strandat 1669.505 kb on + strandat 1669.654 kb on + strandat 1669.655 kb on - strandat 1669.655 kb on - strandat 1669.655 kb on - strandat 1669.725 kb on - strandat 1669.830 kb on - strandat 1669.963 kb on + strandat 1670.036 kb on + strandat 1670.036 kb on + strandat 1670.036 kb on + strandat 1670.036 kb on + strandat 1670.037 kb on - strandat 1670.216 kb on - strandat 1670.229 kb on + strandat 1670.229 kb on + strandat 1670.330 kb on - strandat 1670.330 kb on - strandat 1670.385 kb on + strandat 1670.386 kb on - strandat 1670.608 kb on - strand, within Xcc-8004.1740.1at 1670.697 kb on + strand, within Xcc-8004.1740.1at 1670.698 kb on - strand, within Xcc-8004.1740.1at 1670.765 kb on + strand, within Xcc-8004.1740.1at 1670.925 kb on - strand, within Xcc-8004.1740.1at 1671.082 kb on - strand, within Xcc-8004.1740.1at 1671.120 kb on + strand, within Xcc-8004.1740.1at 1671.120 kb on + strand, within Xcc-8004.1740.1at 1671.120 kb on + strand, within Xcc-8004.1740.1at 1671.120 kb on + strand, within Xcc-8004.1740.1at 1671.120 kb on + strand, within Xcc-8004.1740.1at 1671.121 kb on - strand, within Xcc-8004.1740.1at 1671.121 kb on - strand, within Xcc-8004.1740.1at 1671.121 kb on - strand, within Xcc-8004.1740.1at 1671.243 kb on + strand, within Xcc-8004.1740.1at 1671.244 kb on - strand, within Xcc-8004.1740.1at 1671.244 kb on - strand, within Xcc-8004.1740.1at 1671.244 kb on - strand, within Xcc-8004.1740.1at 1671.244 kb on - strand, within Xcc-8004.1740.1at 1671.246 kb on + strand, within Xcc-8004.1740.1at 1671.246 kb on + strand, within Xcc-8004.1740.1at 1671.246 kb on + strand, within Xcc-8004.1740.1at 1671.247 kb on - strand, within Xcc-8004.1740.1at 1671.247 kb on - strand, within Xcc-8004.1740.1at 1671.247 kb on - strand, within Xcc-8004.1740.1at 1671.259 kb on - strand, within Xcc-8004.1740.1at 1671.259 kb on - strand, within Xcc-8004.1740.1at 1671.417 kb on + strand, within Xcc-8004.1740.1at 1671.417 kb on - strand, within Xcc-8004.1740.1at 1671.418 kb on - strand, within Xcc-8004.1740.1at 1671.492 kb on + strand, within Xcc-8004.1740.1at 1671.493 kb on - strand, within Xcc-8004.1740.1at 1671.493 kb on - strand, within Xcc-8004.1740.1at 1671.493 kb on - strand, within Xcc-8004.1740.1at 1671.732 kb on + strandat 1671.733 kb on - strandat 1671.753 kb on - strandat 1671.753 kb on - strandat 1671.879 kb on + strandat 1671.879 kb on + strandat 1671.879 kb on + strandat 1671.879 kb on + strandat 1671.879 kb on + strandat 1671.880 kb on - strandat 1671.880 kb on - strandat 1671.880 kb on - strandat 1671.880 kb on - strandat 1671.981 kb on + strandat 1672.132 kb on + strandat 1672.132 kb on + strandat 1672.133 kb on - strandat 1672.133 kb on - strandat 1672.133 kb on - strandat 1672.349 kb on + strand, within Xcc-8004.1741.1at 1672.350 kb on - strand, within Xcc-8004.1741.1at 1672.350 kb on - strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.404 kb on + strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.405 kb on - strand, within Xcc-8004.1741.1at 1672.475 kb on + strand, within Xcc-8004.1741.1at 1672.476 kb on - strand, within Xcc-8004.1741.1at 1672.483 kb on + strand, within Xcc-8004.1741.1at 1672.483 kb on + strand, within Xcc-8004.1741.1at 1672.484 kb on - strand, within Xcc-8004.1741.1at 1672.484 kb on - strand, within Xcc-8004.1741.1at 1672.484 kb on - strand, within Xcc-8004.1741.1at 1672.540 kb on + strand, within Xcc-8004.1741.1at 1672.541 kb on - strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.543 kb on - strand, within Xcc-8004.1741.1at 1672.543 kb on - strand, within Xcc-8004.1741.1at 1672.774 kb on + strand, within Xcc-8004.1741.1at 1672.775 kb on - strand, within Xcc-8004.1741.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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1,669,376 + Xcc-8004.1737.1 0.82 +1.9
1,669,376 + Xcc-8004.1737.1 0.82 -2.4
1,669,376 + Xcc-8004.1737.1 0.82 +0.7
1,669,376 + Xcc-8004.1737.1 0.82 -2.2
1,669,377 - Xcc-8004.1737.1 0.82 -1.2
1,669,377 - Xcc-8004.1737.1 0.82 +1.2
1,669,401 - Xcc-8004.1737.1 0.84 -1.3
1,669,401 - Xcc-8004.1737.1 0.84 -2.3
1,669,408 - Xcc-8004.1737.1 0.84 -2.4
1,669,416 - Xcc-8004.1737.1 0.85 -0.4
1,669,427 + Xcc-8004.1737.1 0.86 +0.9
1,669,428 - Xcc-8004.1737.1 0.86 -1.6
1,669,460 + Xcc-8004.1737.1 0.88 -1.5
1,669,461 - Xcc-8004.1737.1 0.88 +0.7
1,669,505 + -0.4
1,669,505 + -2.6
1,669,654 + +2.6
1,669,655 - +1.4
1,669,655 - -2.4
1,669,655 - -1.1
1,669,725 - +2.9
1,669,830 - +0.8
1,669,963 + -1.0
1,670,036 + -0.5
1,670,036 + -2.4
1,670,036 + -1.0
1,670,036 + -1.4
1,670,037 - +1.8
1,670,216 - +0.9
1,670,229 + -1.0
1,670,229 + +0.1
1,670,330 - +1.9
1,670,330 - +2.1
1,670,385 + +2.1
1,670,386 - -0.5
1,670,608 - Xcc-8004.1740.1 0.18 -0.9
1,670,697 + Xcc-8004.1740.1 0.24 +0.0
1,670,698 - Xcc-8004.1740.1 0.24 -0.3
1,670,765 + Xcc-8004.1740.1 0.28 -2.0
1,670,925 - Xcc-8004.1740.1 0.39 +1.0
1,671,082 - Xcc-8004.1740.1 0.50 +0.5
1,671,120 + Xcc-8004.1740.1 0.52 -1.5
1,671,120 + Xcc-8004.1740.1 0.52 -0.3
1,671,120 + Xcc-8004.1740.1 0.52 -0.2
1,671,120 + Xcc-8004.1740.1 0.52 +1.3
1,671,120 + Xcc-8004.1740.1 0.52 -1.1
1,671,121 - Xcc-8004.1740.1 0.52 -0.1
1,671,121 - Xcc-8004.1740.1 0.52 -1.1
1,671,121 - Xcc-8004.1740.1 0.52 -2.1
1,671,243 + Xcc-8004.1740.1 0.60 +1.7
1,671,244 - Xcc-8004.1740.1 0.61 +0.2
1,671,244 - Xcc-8004.1740.1 0.61 +2.1
1,671,244 - Xcc-8004.1740.1 0.61 -2.2
1,671,244 - Xcc-8004.1740.1 0.61 +2.1
1,671,246 + Xcc-8004.1740.1 0.61 +1.9
1,671,246 + Xcc-8004.1740.1 0.61 +1.3
1,671,246 + Xcc-8004.1740.1 0.61 -1.9
1,671,247 - Xcc-8004.1740.1 0.61 +2.5
1,671,247 - Xcc-8004.1740.1 0.61 -2.0
1,671,247 - Xcc-8004.1740.1 0.61 -0.6
1,671,259 - Xcc-8004.1740.1 0.62 -1.5
1,671,259 - Xcc-8004.1740.1 0.62 +2.1
1,671,417 + Xcc-8004.1740.1 0.72 +0.1
1,671,417 - Xcc-8004.1740.1 0.72 +0.5
1,671,418 - Xcc-8004.1740.1 0.72 -1.0
1,671,492 + Xcc-8004.1740.1 0.77 -1.4
1,671,493 - Xcc-8004.1740.1 0.77 +1.1
1,671,493 - Xcc-8004.1740.1 0.77 -0.4
1,671,493 - Xcc-8004.1740.1 0.77 +0.8
1,671,732 + -0.3
1,671,733 - -0.8
1,671,753 - +0.4
1,671,753 - +0.0
1,671,879 + +1.3
1,671,879 + +3.1
1,671,879 + -1.7
1,671,879 + -1.3
1,671,879 + +1.2
1,671,880 - +0.7
1,671,880 - -1.3
1,671,880 - -0.7
1,671,880 - -2.8
1,671,981 + -1.2
1,672,132 + -0.4
1,672,132 + +1.7
1,672,133 - +1.3
1,672,133 - -0.2
1,672,133 - -2.3
1,672,349 + Xcc-8004.1741.1 0.20 -0.9
1,672,350 - Xcc-8004.1741.1 0.20 -2.1
1,672,350 - Xcc-8004.1741.1 0.20 +2.5
1,672,404 + Xcc-8004.1741.1 0.25 +2.4
1,672,404 + Xcc-8004.1741.1 0.25 +0.7
1,672,404 + Xcc-8004.1741.1 0.25 +1.7
1,672,404 + Xcc-8004.1741.1 0.25 +1.7
1,672,404 + Xcc-8004.1741.1 0.25 -3.3
1,672,404 + Xcc-8004.1741.1 0.25 +1.8
1,672,404 + Xcc-8004.1741.1 0.25 -0.3
1,672,404 + Xcc-8004.1741.1 0.25 +0.6
1,672,405 - Xcc-8004.1741.1 0.26 +0.7
1,672,405 - Xcc-8004.1741.1 0.26 +3.3
1,672,405 - Xcc-8004.1741.1 0.26 -0.2
1,672,405 - Xcc-8004.1741.1 0.26 +0.6
1,672,405 - Xcc-8004.1741.1 0.26 +1.1
1,672,405 - Xcc-8004.1741.1 0.26 +2.1
1,672,475 + Xcc-8004.1741.1 0.33 -0.9
1,672,476 - Xcc-8004.1741.1 0.33 -0.3
1,672,483 + Xcc-8004.1741.1 0.33 -2.0
1,672,483 + Xcc-8004.1741.1 0.33 +1.5
1,672,484 - Xcc-8004.1741.1 0.33 -0.4
1,672,484 - Xcc-8004.1741.1 0.33 -0.2
1,672,484 - Xcc-8004.1741.1 0.33 -3.3
1,672,540 + Xcc-8004.1741.1 0.39 +0.9
1,672,541 - Xcc-8004.1741.1 0.39 +0.4
1,672,542 + Xcc-8004.1741.1 0.39 -2.6
1,672,542 + Xcc-8004.1741.1 0.39 +1.9
1,672,542 + Xcc-8004.1741.1 0.39 +0.4
1,672,543 - Xcc-8004.1741.1 0.39 +0.8
1,672,543 - Xcc-8004.1741.1 0.39 +1.9
1,672,774 + Xcc-8004.1741.1 0.62 -1.9
1,672,775 - Xcc-8004.1741.1 0.62 -1.7

Or see this region's nucleotide sequence