Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1175.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1174.1 and Xcc-8004.1175.1 overlap by 16 nucleotidesXcc-8004.1175.1 and Xcc-8004.1176.1 are separated by 113 nucleotidesXcc-8004.1176.1 and Xcc-8004.1177.1 overlap by 90 nucleotidesXcc-8004.1177.1 and Xcc-8004.1178.1 overlap by 7 nucleotides Xcc-8004.1174.1: Xcc-8004.1174.1 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 1,108,114 to 1,109,634 Xcc-8004.1174.1 Xcc-8004.1175.1: Xcc-8004.1175.1 - FhuE receptor precursor, at 1,109,619 to 1,110,302 Xcc-8004.1175.1 Xcc-8004.1176.1: Xcc-8004.1176.1 - hypothetical protein, at 1,110,416 to 1,110,613 Xcc-8004.1176.1 Xcc-8004.1177.1: Xcc-8004.1177.1 - Mobile element protein, at 1,110,524 to 1,110,787 Xcc-8004.1177.1 Xcc-8004.1178.1: Xcc-8004.1178.1 - Mobile element protein, at 1,110,781 to 1,111,626 Xcc-8004.1178.1 Position (kb) 1109 1110 1111Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1108.772 kb on + strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1at 1108.773 kb on - strand, within Xcc-8004.1174.1at 1108.849 kb on + strand, within Xcc-8004.1174.1at 1108.849 kb on + strand, within Xcc-8004.1174.1at 1108.849 kb on + strand, within Xcc-8004.1174.1at 1108.902 kb on - strand, within Xcc-8004.1174.1at 1108.958 kb on + strand, within Xcc-8004.1174.1at 1108.958 kb on + strand, within Xcc-8004.1174.1at 1108.959 kb on - strand, within Xcc-8004.1174.1at 1108.959 kb on - strand, within Xcc-8004.1174.1at 1109.045 kb on + strand, within Xcc-8004.1174.1at 1109.045 kb on + strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.046 kb on - strand, within Xcc-8004.1174.1at 1109.049 kb on + strand, within Xcc-8004.1174.1at 1109.105 kb on + strand, within Xcc-8004.1174.1at 1109.105 kb on + strand, within Xcc-8004.1174.1at 1109.106 kb on - strand, within Xcc-8004.1174.1at 1109.202 kb on - strand, within Xcc-8004.1174.1at 1109.205 kb on + strand, within Xcc-8004.1174.1at 1109.261 kb on + strand, within Xcc-8004.1174.1at 1109.262 kb on - strand, within Xcc-8004.1174.1at 1109.271 kb on - strand, within Xcc-8004.1174.1at 1109.271 kb on - strand, within Xcc-8004.1174.1at 1109.380 kb on - strand, within Xcc-8004.1174.1at 1109.424 kb on - strand, within Xcc-8004.1174.1at 1109.498 kb on + strandat 1109.498 kb on + strandat 1109.504 kb on + strandat 1109.504 kb on + strandat 1109.827 kb on + strand, within Xcc-8004.1175.1at 1109.828 kb on - strand, within Xcc-8004.1175.1at 1109.828 kb on - strand, within Xcc-8004.1175.1at 1109.828 kb on - strand, within Xcc-8004.1175.1at 1109.878 kb on + strand, within Xcc-8004.1175.1at 1109.878 kb on + strand, within Xcc-8004.1175.1at 1109.902 kb on + strand, within Xcc-8004.1175.1at 1109.902 kb on + strand, within Xcc-8004.1175.1at 1109.903 kb on - strand, within Xcc-8004.1175.1at 1109.903 kb on - strand, within Xcc-8004.1175.1at 1109.915 kb on - strand, within Xcc-8004.1175.1at 1109.929 kb on + strand, within Xcc-8004.1175.1at 1110.291 kb on - strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.293 kb on + strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.294 kb on - strandat 1110.381 kb on + strandat 1110.381 kb on + strandat 1110.381 kb on + strandat 1110.381 kb on + strandat 1110.382 kb on - strandat 1110.382 kb on - strandat 1110.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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1,108,772 + Xcc-8004.1174.1 0.43 -0.6
1,108,773 - Xcc-8004.1174.1 0.43 -0.6
1,108,773 - Xcc-8004.1174.1 0.43 +1.1
1,108,773 - Xcc-8004.1174.1 0.43 -1.4
1,108,849 + Xcc-8004.1174.1 0.48 -2.9
1,108,849 + Xcc-8004.1174.1 0.48 +0.7
1,108,849 + Xcc-8004.1174.1 0.48 -0.9
1,108,902 - Xcc-8004.1174.1 0.52 -0.8
1,108,958 + Xcc-8004.1174.1 0.55 +3.4
1,108,958 + Xcc-8004.1174.1 0.55 -0.1
1,108,959 - Xcc-8004.1174.1 0.56 -0.4
1,108,959 - Xcc-8004.1174.1 0.56 -0.1
1,109,045 + Xcc-8004.1174.1 0.61 -3.3
1,109,045 + Xcc-8004.1174.1 0.61 +0.3
1,109,046 - Xcc-8004.1174.1 0.61 +0.1
1,109,046 - Xcc-8004.1174.1 0.61 +0.4
1,109,046 - Xcc-8004.1174.1 0.61 -0.1
1,109,046 - Xcc-8004.1174.1 0.61 -1.3
1,109,046 - Xcc-8004.1174.1 0.61 +0.7
1,109,046 - Xcc-8004.1174.1 0.61 -1.6
1,109,049 + Xcc-8004.1174.1 0.61 -1.2
1,109,105 + Xcc-8004.1174.1 0.65 +2.4
1,109,105 + Xcc-8004.1174.1 0.65 +0.2
1,109,106 - Xcc-8004.1174.1 0.65 -0.1
1,109,202 - Xcc-8004.1174.1 0.72 -2.8
1,109,205 + Xcc-8004.1174.1 0.72 -2.8
1,109,261 + Xcc-8004.1174.1 0.75 +0.2
1,109,262 - Xcc-8004.1174.1 0.75 +0.0
1,109,271 - Xcc-8004.1174.1 0.76 -1.0
1,109,271 - Xcc-8004.1174.1 0.76 -0.3
1,109,380 - Xcc-8004.1174.1 0.83 -1.8
1,109,424 - Xcc-8004.1174.1 0.86 +0.5
1,109,498 + -1.0
1,109,498 + -0.4
1,109,504 + -2.1
1,109,504 + +1.9
1,109,827 + Xcc-8004.1175.1 0.30 -3.2
1,109,828 - Xcc-8004.1175.1 0.31 -1.8
1,109,828 - Xcc-8004.1175.1 0.31 +3.6
1,109,828 - Xcc-8004.1175.1 0.31 +0.2
1,109,878 + Xcc-8004.1175.1 0.38 +2.0
1,109,878 + Xcc-8004.1175.1 0.38 +1.0
1,109,902 + Xcc-8004.1175.1 0.41 +2.4
1,109,902 + Xcc-8004.1175.1 0.41 +1.2
1,109,903 - Xcc-8004.1175.1 0.42 -0.8
1,109,903 - Xcc-8004.1175.1 0.42 -1.1
1,109,915 - Xcc-8004.1175.1 0.43 -0.4
1,109,929 + Xcc-8004.1175.1 0.45 +1.9
1,110,291 - -0.6
1,110,293 + +0.3
1,110,293 + +0.5
1,110,293 + -0.1
1,110,293 + -1.1
1,110,293 + -0.2
1,110,293 + +1.8
1,110,293 + -2.0
1,110,294 - -1.1
1,110,294 - +0.6
1,110,294 - -2.2
1,110,294 - +0.1
1,110,294 - -0.5
1,110,294 - -1.1
1,110,294 - -0.2
1,110,381 + +0.4
1,110,381 + +1.7
1,110,381 + -0.4
1,110,381 + -1.6
1,110,382 - +0.7
1,110,382 - -1.2
1,110,403 + -0.2

Or see this region's nucleotide sequence