Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1127.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1125.1 and Xcc-8004.1126.1 are separated by 84 nucleotidesXcc-8004.1126.1 and Xcc-8004.1127.1 are separated by 69 nucleotidesXcc-8004.1127.1 and Xcc-8004.1128.1 are separated by 228 nucleotides Xcc-8004.1125.1: Xcc-8004.1125.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 1,070,291 to 1,071,490 Xcc-8004.1125.1 Xcc-8004.1126.1: Xcc-8004.1126.1 - Electron transfer protein azurin I, at 1,071,575 to 1,072,102 Xcc-8004.1126.1 Xcc-8004.1127.1: Xcc-8004.1127.1 - transcriptional regulator, at 1,072,172 to 1,074,937 Xcc-8004.1127.1 Xcc-8004.1128.1: Xcc-8004.1128.1 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 1,075,166 to 1,076,455 Xcc-8004.1128.1 Position (kb) 1072 1073 1074 1075Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1071.255 kb on + strand, within Xcc-8004.1125.1at 1071.256 kb on - strand, within Xcc-8004.1125.1at 1071.303 kb on + strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.304 kb on - strand, within Xcc-8004.1125.1at 1071.453 kb on + strandat 1071.483 kb on - strandat 1071.609 kb on + strandat 1071.609 kb on + strandat 1071.610 kb on - strandat 1071.929 kb on + strand, within Xcc-8004.1126.1at 1071.929 kb on + strand, within Xcc-8004.1126.1at 1071.930 kb on - strand, within Xcc-8004.1126.1at 1072.037 kb on + strand, within Xcc-8004.1126.1at 1072.040 kb on - strand, within Xcc-8004.1126.1at 1072.085 kb on - strandat 1072.590 kb on + strand, within Xcc-8004.1127.1at 1072.590 kb on + strand, within Xcc-8004.1127.1at 1072.591 kb on - strand, within Xcc-8004.1127.1at 1072.629 kb on - strand, within Xcc-8004.1127.1at 1072.810 kb on + strand, within Xcc-8004.1127.1at 1073.217 kb on + strand, within Xcc-8004.1127.1at 1073.340 kb on + strand, within Xcc-8004.1127.1at 1073.527 kb on - strand, within Xcc-8004.1127.1at 1073.752 kb on - strand, within Xcc-8004.1127.1at 1073.752 kb on - strand, within Xcc-8004.1127.1at 1073.811 kb on + strand, within Xcc-8004.1127.1at 1073.811 kb on + strand, within Xcc-8004.1127.1at 1073.812 kb on - strand, within Xcc-8004.1127.1at 1073.812 kb on - strand, within Xcc-8004.1127.1at 1074.015 kb on - strand, within Xcc-8004.1127.1at 1074.117 kb on + strand, within Xcc-8004.1127.1at 1074.232 kb on + strand, within Xcc-8004.1127.1at 1074.234 kb on + strand, within Xcc-8004.1127.1at 1074.234 kb on + strand, within Xcc-8004.1127.1at 1074.235 kb on - strand, within Xcc-8004.1127.1at 1074.243 kb on - strand, within Xcc-8004.1127.1at 1074.243 kb on - strand, within Xcc-8004.1127.1at 1074.474 kb on + strand, within Xcc-8004.1127.1at 1075.108 kb on + strandat 1075.108 kb on + strandat 1075.108 kb on + strandat 1075.108 kb on + strandat 1075.109 kb on - strandat 1075.109 kb on - strandat 1075.109 kb on - strandat 1075.326 kb on - strand, within Xcc-8004.1128.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days
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1,071,255 + Xcc-8004.1125.1 0.80 +0.4
1,071,256 - Xcc-8004.1125.1 0.80 +0.8
1,071,303 + Xcc-8004.1125.1 0.84 -2.5
1,071,304 - Xcc-8004.1125.1 0.84 +1.4
1,071,304 - Xcc-8004.1125.1 0.84 +0.4
1,071,304 - Xcc-8004.1125.1 0.84 +2.6
1,071,304 - Xcc-8004.1125.1 0.84 -1.4
1,071,453 + -0.9
1,071,483 - +1.0
1,071,609 + +0.7
1,071,609 + +0.2
1,071,610 - +0.1
1,071,929 + Xcc-8004.1126.1 0.67 +0.9
1,071,929 + Xcc-8004.1126.1 0.67 +0.5
1,071,930 - Xcc-8004.1126.1 0.67 +3.5
1,072,037 + Xcc-8004.1126.1 0.88 +1.6
1,072,040 - Xcc-8004.1126.1 0.88 +1.8
1,072,085 - +0.6
1,072,590 + Xcc-8004.1127.1 0.15 -0.9
1,072,590 + Xcc-8004.1127.1 0.15 +1.0
1,072,591 - Xcc-8004.1127.1 0.15 -0.9
1,072,629 - Xcc-8004.1127.1 0.17 -3.1
1,072,810 + Xcc-8004.1127.1 0.23 -2.5
1,073,217 + Xcc-8004.1127.1 0.38 -1.2
1,073,340 + Xcc-8004.1127.1 0.42 +1.3
1,073,527 - Xcc-8004.1127.1 0.49 +0.7
1,073,752 - Xcc-8004.1127.1 0.57 +1.0
1,073,752 - Xcc-8004.1127.1 0.57 +0.4
1,073,811 + Xcc-8004.1127.1 0.59 -2.0
1,073,811 + Xcc-8004.1127.1 0.59 +0.7
1,073,812 - Xcc-8004.1127.1 0.59 +2.8
1,073,812 - Xcc-8004.1127.1 0.59 -0.4
1,074,015 - Xcc-8004.1127.1 0.67 +1.3
1,074,117 + Xcc-8004.1127.1 0.70 -2.9
1,074,232 + Xcc-8004.1127.1 0.74 +1.3
1,074,234 + Xcc-8004.1127.1 0.75 -1.8
1,074,234 + Xcc-8004.1127.1 0.75 +1.2
1,074,235 - Xcc-8004.1127.1 0.75 -1.9
1,074,243 - Xcc-8004.1127.1 0.75 +0.3
1,074,243 - Xcc-8004.1127.1 0.75 +1.9
1,074,474 + Xcc-8004.1127.1 0.83 +2.2
1,075,108 + -0.2
1,075,108 + +1.4
1,075,108 + -2.9
1,075,108 + +0.5
1,075,109 - -0.0
1,075,109 - -0.2
1,075,109 - +0.1
1,075,326 - Xcc-8004.1128.1 0.12 -0.2

Or see this region's nucleotide sequence