Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09395

Experiment: Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotidesBWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotidesBWI76_RS09395 and BWI76_RS09400 are separated by 76 nucleotidesBWI76_RS09400 and BWI76_RS09405 are separated by 305 nucleotidesBWI76_RS09405 and BWI76_RS09410 overlap by 38 nucleotides BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291 _RS09385 BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773 _RS09390 BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855 _RS09395 BWI76_RS09400: BWI76_RS09400 - phage transcriptional activator, Ogr/delta, at 1,971,932 to 1,972,147 _RS09400 BWI76_RS09405: BWI76_RS09405 - hypothetical protein, at 1,972,453 to 1,972,632 _RS09405 BWI76_RS09410: BWI76_RS09410 - reverse transcriptase, at 1,972,595 to 1,973,191 _RS09410 Position (kb) 1970 1971 1972Strain fitness (log2 ratio) -1 0 1at 1970.375 kb on + strand, within BWI76_RS09390at 1970.560 kb on - strand, within BWI76_RS09390at 1970.642 kb on + strand, within BWI76_RS09390at 1970.698 kb on + strand, within BWI76_RS09390at 1970.770 kb on - strandat 1970.812 kb on + strandat 1971.182 kb on + strand, within BWI76_RS09395at 1971.190 kb on - strand, within BWI76_RS09395at 1971.309 kb on + strand, within BWI76_RS09395at 1971.311 kb on + strand, within BWI76_RS09395at 1971.574 kb on - strand, within BWI76_RS09395at 1971.617 kb on - strandat 1971.657 kb on + strand, within BWI76_RS09395at 1971.684 kb on + strand, within BWI76_RS09395at 1971.713 kb on - strand, within BWI76_RS09395at 1971.745 kb on - strand, within BWI76_RS09395at 1971.755 kb on - strandat 1971.791 kb on - strandat 1971.915 kb on + strandat 1972.037 kb on + strand, within BWI76_RS09400at 1972.070 kb on - strand, within BWI76_RS09400at 1972.135 kb on - strandat 1972.188 kb on + strandat 1972.234 kb on + strandat 1972.249 kb on + strandat 1972.293 kb on - strandat 1972.329 kb on + strandat 1972.331 kb on + strandat 1972.434 kb on - strandat 1972.434 kb on - strandat 1972.434 kb on - strandat 1972.441 kb on + strandat 1972.458 kb on - strandat 1972.477 kb on + strand, within BWI76_RS09405at 1972.477 kb on + strand, within BWI76_RS09405at 1972.509 kb on + strand, within BWI76_RS09405at 1972.509 kb on + strand, within BWI76_RS09405at 1972.534 kb on + strand, within BWI76_RS09405at 1972.544 kb on + strand, within BWI76_RS09405at 1972.570 kb on + strand, within BWI76_RS09405at 1972.638 kb on + strandat 1972.646 kb on + strandat 1972.646 kb on - strandat 1972.657 kb on + strand, within BWI76_RS09410at 1972.665 kb on + strand, within BWI76_RS09410at 1972.665 kb on + strand, within BWI76_RS09410at 1972.673 kb on - strand, within BWI76_RS09410at 1972.691 kb on + strand, within BWI76_RS09410at 1972.770 kb on - strand, within BWI76_RS09410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
1,970,375 + BWI76_RS09390 0.18 -0.0
1,970,560 - BWI76_RS09390 0.56 +0.1
1,970,642 + BWI76_RS09390 0.73 -0.6
1,970,698 + BWI76_RS09390 0.84 -0.9
1,970,770 - -0.8
1,970,812 + -0.8
1,971,182 + BWI76_RS09395 0.38 -0.9
1,971,190 - BWI76_RS09395 0.39 +1.1
1,971,309 + BWI76_RS09395 0.50 -0.4
1,971,311 + BWI76_RS09395 0.50 -0.8
1,971,574 - BWI76_RS09395 0.74 -0.8
1,971,617 - -0.1
1,971,657 + BWI76_RS09395 0.82 -1.1
1,971,684 + BWI76_RS09395 0.84 -1.0
1,971,713 - BWI76_RS09395 0.87 -0.0
1,971,745 - BWI76_RS09395 0.90 -1.7
1,971,755 - -0.7
1,971,791 - -0.6
1,971,915 + -0.2
1,972,037 + BWI76_RS09400 0.49 -0.0
1,972,070 - BWI76_RS09400 0.64 -0.6
1,972,135 - +0.5
1,972,188 + -0.7
1,972,234 + -0.5
1,972,249 + +0.3
1,972,293 - -0.3
1,972,329 + -0.3
1,972,331 + +0.7
1,972,434 - +0.2
1,972,434 - -0.4
1,972,434 - -0.5
1,972,441 + -0.2
1,972,458 - -0.4
1,972,477 + BWI76_RS09405 0.13 -0.2
1,972,477 + BWI76_RS09405 0.13 +0.1
1,972,509 + BWI76_RS09405 0.31 -0.3
1,972,509 + BWI76_RS09405 0.31 +0.5
1,972,534 + BWI76_RS09405 0.45 -0.1
1,972,544 + BWI76_RS09405 0.51 -0.3
1,972,570 + BWI76_RS09405 0.65 -0.4
1,972,638 + -0.0
1,972,646 + +0.5
1,972,646 - +0.5
1,972,657 + BWI76_RS09410 0.10 +0.7
1,972,665 + BWI76_RS09410 0.12 -1.4
1,972,665 + BWI76_RS09410 0.12 -0.7
1,972,673 - BWI76_RS09410 0.13 -0.5
1,972,691 + BWI76_RS09410 0.16 +0.2
1,972,770 - BWI76_RS09410 0.29 -0.4

Or see this region's nucleotide sequence