Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2341

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2340 and DvMF_2341 are separated by 568 nucleotidesDvMF_2341 and DvMF_2342 are separated by 28 nucleotides DvMF_2340: DvMF_2340 - Sigma 54 interacting domain protein (RefSeq), at 2,949,515 to 2,952,328 _2340 DvMF_2341: DvMF_2341 - hypothetical protein (RefSeq), at 2,952,897 to 2,953,190 _2341 DvMF_2342: DvMF_2342 - protein of unknown function DUF81 (RefSeq), at 2,953,219 to 2,954,271 _2342 Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -1 0 1at 2952.066 kb on + strandat 2952.066 kb on + strandat 2953.024 kb on + strand, within DvMF_2341at 2953.201 kb on + strandat 2953.427 kb on + strand, within DvMF_2342at 2953.759 kb on + strand, within DvMF_2342at 2953.764 kb on + strand, within DvMF_2342at 2953.863 kb on + strand, within DvMF_2342at 2954.046 kb on + strand, within DvMF_2342at 2954.071 kb on + strand, within DvMF_2342at 2954.135 kb on - strand, within DvMF_2342at 2954.142 kb on + strand, within DvMF_2342

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,952,066 + +0.9
2,952,066 + -0.8
2,953,024 + DvMF_2341 0.43 -1.7
2,953,201 + -1.2
2,953,427 + DvMF_2342 0.20 -0.6
2,953,759 + DvMF_2342 0.51 -1.0
2,953,764 + DvMF_2342 0.52 -0.4
2,953,863 + DvMF_2342 0.61 -0.1
2,954,046 + DvMF_2342 0.79 -1.0
2,954,071 + DvMF_2342 0.81 -0.3
2,954,135 - DvMF_2342 0.87 -0.6
2,954,142 + DvMF_2342 0.88 -0.1

Or see this region's nucleotide sequence