Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2114

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2112 and DvMF_2113 are separated by 389 nucleotidesDvMF_2113 and DvMF_2114 are separated by 251 nucleotidesDvMF_2114 and DvMF_2115 are separated by 235 nucleotidesDvMF_2115 and DvMF_2116 are separated by 108 nucleotides DvMF_2112: DvMF_2112 - ADP-ribosylation/Crystallin J1 (RefSeq), at 2,632,386 to 2,633,303 _2112 DvMF_2113: DvMF_2113 - hypothetical protein (RefSeq), at 2,633,693 to 2,633,878 _2113 DvMF_2114: DvMF_2114 - putative rRNA methylase (RefSeq), at 2,634,130 to 2,634,861 _2114 DvMF_2115: DvMF_2115 - hypothetical protein (RefSeq), at 2,635,097 to 2,635,339 _2115 DvMF_2116: DvMF_2116 - two-component system, regulatory protein (RefSeq), at 2,635,448 to 2,635,906 _2116 Position (kb) 2634 2635Strain fitness (log2 ratio) -2 -1 0 1at 2633.298 kb on - strandat 2633.385 kb on + strandat 2633.406 kb on + strandat 2633.709 kb on + strandat 2633.715 kb on - strand, within DvMF_2113at 2633.798 kb on - strand, within DvMF_2113at 2634.262 kb on + strand, within DvMF_2114at 2634.267 kb on + strand, within DvMF_2114at 2634.279 kb on + strand, within DvMF_2114at 2634.281 kb on + strand, within DvMF_2114at 2634.327 kb on + strand, within DvMF_2114at 2634.378 kb on - strand, within DvMF_2114at 2634.412 kb on + strand, within DvMF_2114at 2634.440 kb on - strand, within DvMF_2114at 2634.575 kb on + strand, within DvMF_2114at 2634.691 kb on + strand, within DvMF_2114at 2635.102 kb on - strandat 2635.205 kb on - strand, within DvMF_2115at 2635.252 kb on + strand, within DvMF_2115at 2635.300 kb on - strand, within DvMF_2115at 2635.329 kb on + strandat 2635.446 kb on + strandat 2635.580 kb on - strand, within DvMF_2116

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,633,298 - -1.3
2,633,385 + -0.4
2,633,406 + -0.2
2,633,709 + -1.0
2,633,715 - DvMF_2113 0.12 -1.8
2,633,798 - DvMF_2113 0.56 -0.9
2,634,262 + DvMF_2114 0.18 +0.1
2,634,267 + DvMF_2114 0.19 -0.3
2,634,279 + DvMF_2114 0.20 -0.4
2,634,281 + DvMF_2114 0.21 -0.3
2,634,327 + DvMF_2114 0.27 -0.6
2,634,378 - DvMF_2114 0.34 -1.0
2,634,412 + DvMF_2114 0.39 -0.8
2,634,440 - DvMF_2114 0.42 -0.5
2,634,575 + DvMF_2114 0.61 -0.3
2,634,691 + DvMF_2114 0.77 -1.0
2,635,102 - -1.5
2,635,205 - DvMF_2115 0.44 -0.7
2,635,252 + DvMF_2115 0.64 -1.2
2,635,300 - DvMF_2115 0.84 -0.3
2,635,329 + -0.6
2,635,446 + -0.6
2,635,580 - DvMF_2116 0.29 -0.7

Or see this region's nucleotide sequence