Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1870

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1869 and DvMF_1870 are separated by 223 nucleotidesDvMF_1870 and DvMF_1871 are separated by 230 nucleotides DvMF_1869: DvMF_1869 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 2,294,387 to 2,296,210 _1869 DvMF_1870: DvMF_1870 - protein of unknown function DUF362 (RefSeq), at 2,296,434 to 2,297,339 _1870 DvMF_1871: DvMF_1871 - Rhodanese domain protein (RefSeq), at 2,297,570 to 2,298,598 _1871 Position (kb) 2296 2297 2298Strain fitness (log2 ratio) -1 0 1at 2295.521 kb on - strand, within DvMF_1869at 2295.663 kb on + strand, within DvMF_1869at 2295.865 kb on + strand, within DvMF_1869at 2296.024 kb on + strand, within DvMF_1869at 2296.403 kb on - strandat 2296.468 kb on + strandat 2296.546 kb on + strand, within DvMF_1870at 2296.719 kb on - strand, within DvMF_1870at 2296.795 kb on + strand, within DvMF_1870at 2297.048 kb on + strand, within DvMF_1870at 2297.056 kb on - strand, within DvMF_1870at 2297.371 kb on + strandat 2297.385 kb on - strandat 2297.470 kb on - strandat 2297.934 kb on + strand, within DvMF_1871at 2298.040 kb on - strand, within DvMF_1871

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,295,521 - DvMF_1869 0.62 -0.8
2,295,663 + DvMF_1869 0.70 -1.1
2,295,865 + DvMF_1869 0.81 -1.1
2,296,024 + DvMF_1869 0.90 -1.1
2,296,403 - -0.5
2,296,468 + -0.7
2,296,546 + DvMF_1870 0.12 +0.1
2,296,719 - DvMF_1870 0.31 +0.7
2,296,795 + DvMF_1870 0.40 -0.7
2,297,048 + DvMF_1870 0.68 -0.2
2,297,056 - DvMF_1870 0.69 +0.4
2,297,371 + -0.8
2,297,385 - -0.1
2,297,470 - -0.6
2,297,934 + DvMF_1871 0.35 -1.0
2,298,040 - DvMF_1871 0.46 -0.6

Or see this region's nucleotide sequence