Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0917

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0915 and DvMF_0916 are separated by 89 nucleotidesDvMF_0916 and DvMF_0917 are separated by 263 nucleotidesDvMF_0917 and DvMF_R0023 are separated by 406 nucleotidesDvMF_R0023 and DvMF_R0024 are separated by 105 nucleotides DvMF_0915: DvMF_0915 - SufBD protein (RefSeq), at 1,100,546 to 1,101,712 _0915 DvMF_0916: DvMF_0916 - YCII-related (RefSeq), at 1,101,802 to 1,102,089 _0916 DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161 _0917 DvMF_R0023: DvMF_R0023 - 5S ribosomal RNA (RefSeq), at 1,104,568 to 1,104,682 _R0023 DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713 _R0024 Position (kb) 1102 1103 1104 1105Strain fitness (log2 ratio) -1 0 1at 1101.744 kb on + strandat 1101.780 kb on - strandat 1101.979 kb on - strand, within DvMF_0916at 1102.030 kb on - strand, within DvMF_0916at 1102.082 kb on - strandat 1102.265 kb on + strandat 1102.481 kb on + strandat 1102.510 kb on - strandat 1102.550 kb on - strand, within DvMF_0917at 1102.649 kb on + strand, within DvMF_0917at 1102.906 kb on - strand, within DvMF_0917at 1103.055 kb on - strand, within DvMF_0917at 1103.195 kb on - strand, within DvMF_0917at 1103.341 kb on + strand, within DvMF_0917at 1103.381 kb on - strand, within DvMF_0917at 1103.441 kb on - strand, within DvMF_0917at 1103.494 kb on + strand, within DvMF_0917at 1103.612 kb on + strand, within DvMF_0917at 1103.766 kb on + strand, within DvMF_0917at 1103.783 kb on + strand, within DvMF_0917at 1103.879 kb on - strand, within DvMF_0917at 1103.977 kb on - strand, within DvMF_0917at 1103.979 kb on - strand, within DvMF_0917at 1104.328 kb on + strandat 1104.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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1,101,744 + -0.4
1,101,780 - -0.4
1,101,979 - DvMF_0916 0.61 +1.3
1,102,030 - DvMF_0916 0.79 -0.8
1,102,082 - -0.6
1,102,265 + -0.9
1,102,481 + -0.4
1,102,510 - +0.5
1,102,550 - DvMF_0917 0.11 +0.5
1,102,649 + DvMF_0917 0.16 -0.3
1,102,906 - DvMF_0917 0.31 -1.1
1,103,055 - DvMF_0917 0.39 -1.5
1,103,195 - DvMF_0917 0.47 -0.2
1,103,341 + DvMF_0917 0.55 +1.3
1,103,381 - DvMF_0917 0.57 -0.7
1,103,441 - DvMF_0917 0.60 +0.1
1,103,494 + DvMF_0917 0.63 -0.6
1,103,612 + DvMF_0917 0.70 -1.1
1,103,766 + DvMF_0917 0.78 +0.2
1,103,783 + DvMF_0917 0.79 +0.3
1,103,879 - DvMF_0917 0.84 -0.7
1,103,977 - DvMF_0917 0.90 -0.8
1,103,979 - DvMF_0917 0.90 -0.5
1,104,328 + +0.0
1,104,389 - +0.3

Or see this region's nucleotide sequence