Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0907

Experiment: MoLS4 minimal media with D,L-Cysteine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0905 and DvMF_0906 are separated by 276 nucleotidesDvMF_0906 and DvMF_0907 are separated by 223 nucleotidesDvMF_0907 and DvMF_0908 are separated by 544 nucleotides DvMF_0905: DvMF_0905 - hypothetical protein (RefSeq), at 1,089,115 to 1,089,660 _0905 DvMF_0906: DvMF_0906 - UspA domain protein (RefSeq), at 1,089,937 to 1,090,380 _0906 DvMF_0907: DvMF_0907 - NADH dehydrogenase (ubiquinone) (RefSeq), at 1,090,604 to 1,091,962 _0907 DvMF_0908: DvMF_0908 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 1,092,507 to 1,093,670 _0908 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1090.299 kb on - strand, within DvMF_0906at 1090.299 kb on - strand, within DvMF_0906at 1090.397 kb on + strandat 1090.931 kb on - strand, within DvMF_0907at 1090.931 kb on - strand, within DvMF_0907at 1091.090 kb on - strand, within DvMF_0907at 1091.236 kb on + strand, within DvMF_0907at 1091.437 kb on + strand, within DvMF_0907at 1091.451 kb on + strand, within DvMF_0907at 1091.520 kb on - strand, within DvMF_0907at 1091.662 kb on - strand, within DvMF_0907at 1091.729 kb on - strand, within DvMF_0907at 1092.095 kb on - strandat 1092.180 kb on + strandat 1092.285 kb on + strandat 1092.295 kb on + strandat 1092.303 kb on + strandat 1092.303 kb on - strandat 1092.563 kb on + strandat 1092.568 kb on + strandat 1092.571 kb on - strandat 1092.871 kb on - strand, within DvMF_0908at 1092.874 kb on + strand, within DvMF_0908at 1092.884 kb on + strand, within DvMF_0908

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
remove
1,090,299 - DvMF_0906 0.82 -0.3
1,090,299 - DvMF_0906 0.82 -0.6
1,090,397 + -0.2
1,090,931 - DvMF_0907 0.24 -0.8
1,090,931 - DvMF_0907 0.24 -1.6
1,091,090 - DvMF_0907 0.36 -0.5
1,091,236 + DvMF_0907 0.47 -0.9
1,091,437 + DvMF_0907 0.61 +0.1
1,091,451 + DvMF_0907 0.62 -0.6
1,091,520 - DvMF_0907 0.67 -0.7
1,091,662 - DvMF_0907 0.78 -1.6
1,091,729 - DvMF_0907 0.83 -0.7
1,092,095 - -0.8
1,092,180 + -0.0
1,092,285 + -1.2
1,092,295 + -0.2
1,092,303 + -0.3
1,092,303 - +0.4
1,092,563 + -4.6
1,092,568 + -4.7
1,092,571 - -4.4
1,092,871 - DvMF_0908 0.31 -3.2
1,092,874 + DvMF_0908 0.32 -3.7
1,092,884 + DvMF_0908 0.32 -4.0

Or see this region's nucleotide sequence