Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3337

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/5-30 mM)
3,510,627	-	kdpD	DVU3336	0.22	+0.5
3,510,638	-	kdpD	DVU3336	0.23	-0.5
3,510,653	-	kdpD	DVU3336	0.24	-0.3
3,510,700	+	kdpD	DVU3336	0.28	-0.4
3,510,708	+	kdpD	DVU3336	0.29	-0.3
3,510,720	-	kdpD	DVU3336	0.30	-0.2
3,510,723	-	kdpD	DVU3336	0.30	+0.4
3,510,778	-	kdpD	DVU3336	0.35	+0.5
3,510,788	-	kdpD	DVU3336	0.36	-0.2
3,510,790	-	kdpD	DVU3336	0.36	-0.1
3,510,847	+	kdpD	DVU3336	0.41	+0.1
3,510,881	+	kdpD	DVU3336	0.44	+0.3
3,510,889	-	kdpD	DVU3336	0.45	+0.1
3,510,889	-	kdpD	DVU3336	0.45	-0.7
3,510,889	-	kdpD	DVU3336	0.45	+0.2
3,510,889	-	kdpD	DVU3336	0.45	-0.2
3,510,914	-	kdpD	DVU3336	0.47	+0.0
3,510,932	+	kdpD	DVU3336	0.48	+0.1
3,510,947	+	kdpD	DVU3336	0.50	-0.2
3,510,955	-	kdpD	DVU3336	0.50	-0.5
3,510,958	-	kdpD	DVU3336	0.51	-0.0
3,511,346	-	kdpD	DVU3336	0.85	+0.2
3,511,356	+	kdpD	DVU3336	0.86	-0.2
3,511,374	+	kdpD	DVU3336	0.87	-0.3
3,511,374	+	kdpD	DVU3336	0.87	-0.7
3,511,374	+	kdpD	DVU3336	0.87	-0.5
3,511,382	-	kdpD	DVU3336	0.88	-0.2
3,511,382	-	kdpD	DVU3336	0.88	+1.4
3,511,386	+	kdpD	DVU3336	0.88	-0.4
3,511,396	+	kdpD	DVU3336	0.89	-0.8
3,511,404	-	kdpD	DVU3336	0.90	-1.1
3,511,428	+				-0.4
3,511,429	+				+0.3
3,511,429	+				-0.2
3,511,434	+				+0.5
3,511,477	-				-0.8
3,511,479	+				+0.8
3,511,481	+				+0.2
3,511,554	+				+0.3
3,511,554	+				-0.6
3,511,554	+				+1.2
3,511,556	+				+0.1
3,511,562	-				-1.5
3,511,562	-				-0.0
3,511,562	-				-0.1
3,511,562	-				-0.8
3,511,585	-				+0.1
3,511,590	+				+0.6
3,511,598	-				+0.1
3,511,619	+				+0.9
3,511,734	-	kdpC	DVU3337	0.24	+1.0
3,511,750	+	kdpC	DVU3337	0.27	-0.3
3,511,750	+	kdpC	DVU3337	0.27	-0.8
3,511,750	+	kdpC	DVU3337	0.27	+0.5
3,511,750	+	kdpC	DVU3337	0.27	-0.2
3,511,750	+	kdpC	DVU3337	0.27	+1.1
3,511,750	+	kdpC	DVU3337	0.27	-0.9
3,511,771	+	kdpC	DVU3337	0.30	+0.6
3,511,784	+	kdpC	DVU3337	0.33	-0.9
3,511,784	+	kdpC	DVU3337	0.33	-2.9
3,511,792	-	kdpC	DVU3337	0.34	-0.2
3,511,792	-	kdpC	DVU3337	0.34	-0.2
3,511,839	-	kdpC	DVU3337	0.42	-0.2
3,511,839	-	kdpC	DVU3337	0.42	-0.1
3,511,861	-	kdpC	DVU3337	0.46	-2.1
3,511,975	-	kdpC	DVU3337	0.67	-0.2
3,511,979	+	kdpC	DVU3337	0.68	+0.7
3,511,992	-	kdpC	DVU3337	0.70	-0.8
3,511,993	-	kdpC	DVU3337	0.70	-0.2
3,512,005	-	kdpC	DVU3337	0.72	-0.3
3,512,028	-	kdpC	DVU3337	0.76	-1.1
3,512,047	+	kdpC	DVU3337	0.80	-0.3
3,512,055	-	kdpC	DVU3337	0.81	-0.4
3,512,055	-	kdpC	DVU3337	0.81	-0.6
3,512,055	-	kdpC	DVU3337	0.81	-0.1
3,512,057	+	kdpC	DVU3337	0.82	-1.2
3,512,057	+	kdpC	DVU3337	0.82	+0.0
3,512,065	-	kdpC	DVU3337	0.83	+0.1
3,512,070	-	kdpC	DVU3337	0.84	-0.4
3,512,083	+	kdpC	DVU3337	0.86	-0.5
3,512,135	-				-0.4
3,512,214	-				+0.4
3,512,215	+				+0.5
3,512,278	-				+0.5
3,512,312	+				-0.2
3,512,332	+				-0.2
3,512,337	+				-0.4
3,512,413	+	kdpB	DVU3338	0.12	-0.2
3,512,452	+	kdpB	DVU3338	0.14	-0.7
3,512,460	-	kdpB	DVU3338	0.14	-0.6
3,512,544	-	kdpB	DVU3338	0.18	-0.2
3,512,563	-	kdpB	DVU3338	0.19	+0.7
3,512,585	-	kdpB	DVU3338	0.20	-0.4
3,512,598	-	kdpB	DVU3338	0.21	-0.8
3,512,604	-	kdpB	DVU3338	0.21	-0.5
3,512,618	-	kdpB	DVU3338	0.22	+0.3
3,512,653	+	kdpB	DVU3338	0.24	+0.0
3,512,727	-	kdpB	DVU3338	0.27	+0.4
3,512,731	+	kdpB	DVU3338	0.28	+0.3
3,512,808	+	kdpB	DVU3338	0.31	-0.2
3,512,886	-	kdpB	DVU3338	0.35	+0.4
3,512,920	-	kdpB	DVU3338	0.37	+0.0
3,512,950	+	kdpB	DVU3338	0.38	-1.5
3,512,971	-	kdpB	DVU3338	0.39	-0.5
3,512,976	-	kdpB	DVU3338	0.40	-0.4
3,513,086	+	kdpB	DVU3338	0.45	+1.2
3,513,096	-	kdpB	DVU3338	0.46	-0.3
3,513,152	+	kdpB	DVU3338	0.48	+0.6