Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.6.1 and Xcc-8004.8.1 are separated by 67 nucleotides Xcc-8004.8.1 and Xcc-8004.9.1 are separated by 62 nucleotides
Xcc-8004.6.1: Xcc-8004.6.1 - DNA gyrase subunit B (EC 5.99.1.3), at 4,853 to 7,297
Xcc-8004.6.1
Xcc-8004.8.1: Xcc-8004.8.1 - FIG01210301: hypothetical protein, at 7,365 to 8,201
Xcc-8004.8.1
Xcc-8004.9.1: Xcc-8004.9.1 - Zn-dependent protease with chaperone function, at 8,264 to 9,070
Xcc-8004.9.1
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.665 kb on + strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.666 kb on - strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.768 kb on + strand, within Xcc-8004.8.1 at 7.769 kb on - strand, within Xcc-8004.8.1 at 7.911 kb on + strand, within Xcc-8004.8.1 at 7.911 kb on + strand, within Xcc-8004.8.1 at 7.912 kb on - strand, within Xcc-8004.8.1 at 8.073 kb on + strand, within Xcc-8004.8.1 at 8.073 kb on + strand, within Xcc-8004.8.1 at 8.073 kb on + strand, within Xcc-8004.8.1 at 8.074 kb on - strand, within Xcc-8004.8.1 at 8.074 kb on - strand, within Xcc-8004.8.1 at 8.074 kb on - strand, within Xcc-8004.8.1 at 8.074 kb on - strand, within Xcc-8004.8.1 at 8.074 kb on - strand, within Xcc-8004.8.1 at 8.106 kb on + strand, within Xcc-8004.8.1 at 8.106 kb on + strand, within Xcc-8004.8.1 at 8.106 kb on + strand, within Xcc-8004.8.1 at 8.106 kb on + strand, within Xcc-8004.8.1 at 8.106 kb on + strand, within Xcc-8004.8.1 at 8.107 kb on - strand, within Xcc-8004.8.1 at 8.107 kb on - strand, within Xcc-8004.8.1 at 8.107 kb on - strand, within Xcc-8004.8.1 at 8.107 kb on - strand, within Xcc-8004.8.1 at 8.182 kb on - strand at 8.219 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.323 kb on + strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.324 kb on - strand at 8.352 kb on + strand, within Xcc-8004.9.1 at 8.352 kb on + strand, within Xcc-8004.9.1 at 8.352 kb on + strand, within Xcc-8004.9.1 at 8.353 kb on - strand, within Xcc-8004.9.1 at 8.353 kb on - strand, within Xcc-8004.9.1 at 8.353 kb on - strand, within Xcc-8004.9.1 at 8.353 kb on - strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.453 kb on + strand, within Xcc-8004.9.1 at 8.454 kb on - strand, within Xcc-8004.9.1 at 8.454 kb on - strand, within Xcc-8004.9.1 at 8.454 kb on - strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.658 kb on + strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.659 kb on - strand, within Xcc-8004.9.1 at 8.748 kb on - strand, within Xcc-8004.9.1 at 8.748 kb on - strand, within Xcc-8004.9.1 at 9.024 kb on + strand at 9.024 kb on + strand at 9.024 kb on + strand at 9.025 kb on - strand at 9.025 kb on - strand at 9.025 kb on - strand at 9.025 kb on - strand at 9.026 kb on + strand at 9.026 kb on + strand at 9.026 kb on + strand at 9.026 kb on + strand at 9.026 kb on + strand at 9.027 kb on - strand at 9.027 kb on - strand at 9.027 kb on - strand at 9.027 kb on - strand at 9.069 kb on - strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.128 kb on + strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.129 kb on - strand at 9.153 kb on + strand at 9.153 kb on + strand at 9.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 7,665 + Xcc-8004.8.1 0.36 -0.0 7,665 + Xcc-8004.8.1 0.36 -0.5 7,665 + Xcc-8004.8.1 0.36 +0.1 7,665 + Xcc-8004.8.1 0.36 +1.0 7,665 + Xcc-8004.8.1 0.36 -0.1 7,665 + Xcc-8004.8.1 0.36 -0.2 7,665 + Xcc-8004.8.1 0.36 +0.1 7,665 + Xcc-8004.8.1 0.36 +1.0 7,665 + Xcc-8004.8.1 0.36 +0.2 7,665 + Xcc-8004.8.1 0.36 -0.0 7,665 + Xcc-8004.8.1 0.36 -0.9 7,665 + Xcc-8004.8.1 0.36 +1.1 7,665 + Xcc-8004.8.1 0.36 +0.3 7,666 - Xcc-8004.8.1 0.36 -1.3 7,666 - Xcc-8004.8.1 0.36 +0.6 7,666 - Xcc-8004.8.1 0.36 +0.2 7,666 - Xcc-8004.8.1 0.36 +1.0 7,666 - Xcc-8004.8.1 0.36 -0.0 7,666 - Xcc-8004.8.1 0.36 +0.1 7,666 - Xcc-8004.8.1 0.36 +0.1 7,666 - Xcc-8004.8.1 0.36 +0.3 7,768 + Xcc-8004.8.1 0.48 +0.1 7,768 + Xcc-8004.8.1 0.48 +0.8 7,768 + Xcc-8004.8.1 0.48 -0.3 7,768 + Xcc-8004.8.1 0.48 +0.2 7,768 + Xcc-8004.8.1 0.48 -2.2 7,768 + Xcc-8004.8.1 0.48 +1.1 7,768 + Xcc-8004.8.1 0.48 +1.4 7,769 - Xcc-8004.8.1 0.48 +0.5 7,911 + Xcc-8004.8.1 0.65 +0.9 7,911 + Xcc-8004.8.1 0.65 +0.1 7,912 - Xcc-8004.8.1 0.65 -1.2 8,073 + Xcc-8004.8.1 0.85 -1.3 8,073 + Xcc-8004.8.1 0.85 +0.7 8,073 + Xcc-8004.8.1 0.85 +0.7 8,074 - Xcc-8004.8.1 0.85 -0.0 8,074 - Xcc-8004.8.1 0.85 -0.4 8,074 - Xcc-8004.8.1 0.85 -1.5 8,074 - Xcc-8004.8.1 0.85 -0.7 8,074 - Xcc-8004.8.1 0.85 +1.4 8,106 + Xcc-8004.8.1 0.89 -1.5 8,106 + Xcc-8004.8.1 0.89 -0.0 8,106 + Xcc-8004.8.1 0.89 +0.7 8,106 + Xcc-8004.8.1 0.89 +0.2 8,106 + Xcc-8004.8.1 0.89 +0.5 8,107 - Xcc-8004.8.1 0.89 -0.0 8,107 - Xcc-8004.8.1 0.89 +0.1 8,107 - Xcc-8004.8.1 0.89 -0.6 8,107 - Xcc-8004.8.1 0.89 -0.2 8,182 - -1.1 8,219 + +0.3 8,323 + -0.1 8,323 + +0.6 8,323 + +0.2 8,323 + +0.2 8,323 + +0.5 8,323 + -1.2 8,323 + +0.4 8,323 + -0.1 8,323 + +0.3 8,323 + -0.7 8,324 - -0.9 8,324 - +1.2 8,324 - -2.1 8,324 - -0.4 8,324 - -0.0 8,324 - -0.5 8,324 - -0.5 8,324 - -0.3 8,324 - +0.7 8,324 - -0.3 8,324 - +0.0 8,324 - +0.6 8,324 - +0.4 8,324 - +0.3 8,324 - -0.4 8,352 + Xcc-8004.9.1 0.11 +0.2 8,352 + Xcc-8004.9.1 0.11 +1.0 8,352 + Xcc-8004.9.1 0.11 +1.0 8,353 - Xcc-8004.9.1 0.11 -0.3 8,353 - Xcc-8004.9.1 0.11 -0.2 8,353 - Xcc-8004.9.1 0.11 +0.3 8,353 - Xcc-8004.9.1 0.11 +1.0 8,453 + Xcc-8004.9.1 0.23 +1.1 8,453 + Xcc-8004.9.1 0.23 +0.9 8,453 + Xcc-8004.9.1 0.23 -0.7 8,453 + Xcc-8004.9.1 0.23 +0.8 8,453 + Xcc-8004.9.1 0.23 -0.3 8,453 + Xcc-8004.9.1 0.23 -0.4 8,453 + Xcc-8004.9.1 0.23 +0.4 8,453 + Xcc-8004.9.1 0.23 -1.5 8,453 + Xcc-8004.9.1 0.23 -1.8 8,453 + Xcc-8004.9.1 0.23 +0.0 8,453 + Xcc-8004.9.1 0.23 +0.4 8,454 - Xcc-8004.9.1 0.24 +0.2 8,454 - Xcc-8004.9.1 0.24 -0.2 8,454 - Xcc-8004.9.1 0.24 -2.5 8,658 + Xcc-8004.9.1 0.49 +1.0 8,658 + Xcc-8004.9.1 0.49 -3.1 8,658 + Xcc-8004.9.1 0.49 -1.1 8,658 + Xcc-8004.9.1 0.49 +0.9 8,658 + Xcc-8004.9.1 0.49 -1.2 8,658 + Xcc-8004.9.1 0.49 -1.1 8,658 + Xcc-8004.9.1 0.49 -1.0 8,658 + Xcc-8004.9.1 0.49 +0.2 8,658 + Xcc-8004.9.1 0.49 -0.2 8,658 + Xcc-8004.9.1 0.49 -0.6 8,658 + Xcc-8004.9.1 0.49 +1.5 8,658 + Xcc-8004.9.1 0.49 -0.6 8,659 - Xcc-8004.9.1 0.49 -0.1 8,659 - Xcc-8004.9.1 0.49 -0.3 8,659 - Xcc-8004.9.1 0.49 -0.4 8,659 - Xcc-8004.9.1 0.49 +0.8 8,659 - Xcc-8004.9.1 0.49 -1.1 8,659 - Xcc-8004.9.1 0.49 +0.4 8,659 - Xcc-8004.9.1 0.49 +0.3 8,659 - Xcc-8004.9.1 0.49 +0.1 8,659 - Xcc-8004.9.1 0.49 +0.1 8,659 - Xcc-8004.9.1 0.49 -1.1 8,659 - Xcc-8004.9.1 0.49 +0.2 8,659 - Xcc-8004.9.1 0.49 -0.9 8,659 - Xcc-8004.9.1 0.49 +0.5 8,748 - Xcc-8004.9.1 0.60 -0.3 8,748 - Xcc-8004.9.1 0.60 -0.7 9,024 + -0.3 9,024 + +0.0 9,024 + -0.9 9,025 - -0.5 9,025 - -2.1 9,025 - +0.2 9,025 - -0.7 9,026 + +0.1 9,026 + +0.2 9,026 + -0.4 9,026 + -0.1 9,026 + +0.5 9,027 - -1.5 9,027 - -0.5 9,027 - -0.0 9,027 - +0.2 9,069 - +1.2 9,128 + +0.3 9,128 + -0.4 9,128 + +1.6 9,128 + +0.6 9,128 + -1.8 9,128 + -0.0 9,128 + +0.1 9,128 + -0.4 9,128 + -0.3 9,128 + +0.2 9,129 - -1.4 9,129 - -3.5 9,129 - -0.2 9,129 - -0.0 9,129 - -2.7 9,129 - -1.7 9,129 - -1.8 9,129 - +0.0 9,153 + +0.3 9,153 + +0.6 9,177 - +0.0
Or see this region's nucleotide sequence