Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.740.1 and Xcc-8004.741.1 are separated by 2 nucleotides Xcc-8004.741.1 and Xcc-8004.742.1 overlap by 4 nucleotides Xcc-8004.742.1 and Xcc-8004.743.1 are separated by 89 nucleotides
Xcc-8004.740.1: Xcc-8004.740.1 - Triphosphoribosyl-dephospho-CoA synthetase (EC 2.7.8.25), at 688,755 to 689,921
Xcc-8004.740.1
Xcc-8004.741.1: Xcc-8004.741.1 - hypothetical protein, at 689,924 to 690,088
Xcc-8004.741.1
Xcc-8004.742.1: Xcc-8004.742.1 - Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39), at 690,085 to 691,005
Xcc-8004.742.1
Xcc-8004.743.1: Xcc-8004.743.1 - Dicarboxylate carrier protein, at 691,095 to 692,450
Xcc-8004.743.1
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1 at 689.602 kb on + strand, within Xcc-8004.740.1 at 689.702 kb on - strand, within Xcc-8004.740.1 at 689.920 kb on - strand at 689.920 kb on - strand at 690.002 kb on + strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.003 kb on - strand, within Xcc-8004.741.1 at 690.391 kb on - strand, within Xcc-8004.742.1 at 690.525 kb on - strand, within Xcc-8004.742.1 at 690.525 kb on - strand, within Xcc-8004.742.1 at 690.651 kb on + strand, within Xcc-8004.742.1 at 690.651 kb on + strand, within Xcc-8004.742.1 at 690.762 kb on + strand, within Xcc-8004.742.1 at 690.763 kb on - strand, within Xcc-8004.742.1 at 691.031 kb on + strand at 691.031 kb on + strand at 691.032 kb on - strand at 691.067 kb on + strand at 691.067 kb on + strand at 691.068 kb on - strand at 691.068 kb on - strand at 691.073 kb on + strand at 691.287 kb on + strand, within Xcc-8004.743.1 at 691.287 kb on + strand, within Xcc-8004.743.1 at 691.288 kb on - strand, within Xcc-8004.743.1 at 691.482 kb on + strand, within Xcc-8004.743.1 at 691.731 kb on + strand, within Xcc-8004.743.1 at 691.732 kb on - strand, within Xcc-8004.743.1 at 691.732 kb on - strand, within Xcc-8004.743.1 at 691.918 kb on - strand, within Xcc-8004.743.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 689,602 + Xcc-8004.740.1 0.73 -0.4 689,702 - Xcc-8004.740.1 0.81 -0.3 689,920 - +0.9 689,920 - +0.0 690,002 + Xcc-8004.741.1 0.47 -0.7 690,003 - Xcc-8004.741.1 0.48 -0.9 690,003 - Xcc-8004.741.1 0.48 +0.5 690,003 - Xcc-8004.741.1 0.48 -1.1 690,391 - Xcc-8004.742.1 0.33 -0.6 690,525 - Xcc-8004.742.1 0.48 -0.3 690,525 - Xcc-8004.742.1 0.48 -1.5 690,651 + Xcc-8004.742.1 0.61 -0.9 690,651 + Xcc-8004.742.1 0.61 +0.1 690,762 + Xcc-8004.742.1 0.74 -0.7 690,763 - Xcc-8004.742.1 0.74 -1.0 691,031 + -0.7 691,031 + -0.9 691,032 - +1.2 691,067 + +0.5 691,067 + -0.3 691,068 - +0.1 691,068 - +0.3 691,073 + -0.4 691,287 + Xcc-8004.743.1 0.14 -0.6 691,287 + Xcc-8004.743.1 0.14 -0.3 691,288 - Xcc-8004.743.1 0.14 -1.8 691,482 + Xcc-8004.743.1 0.29 -0.1 691,731 + Xcc-8004.743.1 0.47 +1.1 691,732 - Xcc-8004.743.1 0.47 -0.6 691,732 - Xcc-8004.743.1 0.47 -0.1 691,918 - Xcc-8004.743.1 0.61 -0.0
Or see this region's nucleotide sequence