Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5249.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.5245.1 and Xcc-8004.5246.1 overlap by 53 nucleotidesXcc-8004.5246.1 and Xcc-8004.5249.1 are separated by 390 nucleotidesXcc-8004.5249.1 and Xcc-8004.5250.1 are separated by 125 nucleotides Xcc-8004.5245.1: Xcc-8004.5245.1 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 4,984,894 to 4,985,718 Xcc-8004.5245.1 Xcc-8004.5246.1: Xcc-8004.5246.1 - FIG01209964: hypothetical protein, at 4,985,666 to 4,985,824 Xcc-8004.5246.1 Xcc-8004.5249.1: Xcc-8004.5249.1 - Putative oxidoreductase SMc00968, at 4,986,215 to 4,987,384 Xcc-8004.5249.1 Xcc-8004.5250.1: Xcc-8004.5250.1 - Glycerol-3-phosphate acyltransferase (EC 2.3.1.15), at 4,987,510 to 4,989,897 Xcc-8004.5250.1 Position (kb) 4986 4987 4988Strain fitness (log2 ratio) -2 -1 0 1 2at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.327 kb on + strand, within Xcc-8004.5245.1at 4985.328 kb on - strand, within Xcc-8004.5245.1at 4985.328 kb on - strand, within Xcc-8004.5245.1at 4985.387 kb on + strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.388 kb on - strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.469 kb on + strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.470 kb on - strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.609 kb on + strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.610 kb on - strand, within Xcc-8004.5245.1at 4985.885 kb on + strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.902 kb on - strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4985.970 kb on + strandat 4986.035 kb on + strandat 4986.035 kb on + strandat 4986.035 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.044 kb on + strandat 4986.087 kb on + strandat 4986.087 kb on + strandat 4986.087 kb on + strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.088 kb on - strandat 4986.122 kb on - strandat 4986.182 kb on - strandat 4986.182 kb on - strandat 4986.182 kb on - strandat 4986.216 kb on + strandat 4986.455 kb on + strand, within Xcc-8004.5249.1at 4986.903 kb on + strand, within Xcc-8004.5249.1at 4986.903 kb on + strand, within Xcc-8004.5249.1at 4986.903 kb on + strand, within Xcc-8004.5249.1at 4986.903 kb on + strand, within Xcc-8004.5249.1at 4986.904 kb on - strand, within Xcc-8004.5249.1at 4986.904 kb on - strand, within Xcc-8004.5249.1at 4986.904 kb on - strand, within Xcc-8004.5249.1at 4986.904 kb on - strand, within Xcc-8004.5249.1at 4986.904 kb on - strand, within Xcc-8004.5249.1at 4987.035 kb on + strand, within Xcc-8004.5249.1at 4987.036 kb on - strand, within Xcc-8004.5249.1at 4987.036 kb on - strand, within Xcc-8004.5249.1at 4987.036 kb on - strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.041 kb on + strand, within Xcc-8004.5249.1at 4987.042 kb on - strand, within Xcc-8004.5249.1at 4987.042 kb on - strand, within Xcc-8004.5249.1at 4987.042 kb on - strand, within Xcc-8004.5249.1at 4987.073 kb on - strand, within Xcc-8004.5249.1at 4987.262 kb on + strand, within Xcc-8004.5249.1at 4987.331 kb on + strandat 4987.332 kb on - strandat 4987.441 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.445 kb on + strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.446 kb on - strandat 4987.477 kb on + strandat 4987.477 kb on + strandat 4987.478 kb on - strandat 4987.500 kb on + strandat 4987.500 kb on + strandat 4987.501 kb on - strandat 4987.501 kb on - strandat 4987.511 kb on + strandat 4987.512 kb on - strandat 4987.850 kb on + strand, within Xcc-8004.5250.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
remove
4,985,327 + Xcc-8004.5245.1 0.52 -0.4
4,985,327 + Xcc-8004.5245.1 0.52 -0.9
4,985,327 + Xcc-8004.5245.1 0.52 +1.8
4,985,328 - Xcc-8004.5245.1 0.53 +0.8
4,985,328 - Xcc-8004.5245.1 0.53 -0.3
4,985,387 + Xcc-8004.5245.1 0.60 -0.9
4,985,388 - Xcc-8004.5245.1 0.60 -0.5
4,985,388 - Xcc-8004.5245.1 0.60 +0.6
4,985,388 - Xcc-8004.5245.1 0.60 +0.8
4,985,388 - Xcc-8004.5245.1 0.60 -0.1
4,985,469 + Xcc-8004.5245.1 0.70 -0.6
4,985,469 + Xcc-8004.5245.1 0.70 +0.3
4,985,469 + Xcc-8004.5245.1 0.70 -0.4
4,985,469 + Xcc-8004.5245.1 0.70 +0.4
4,985,470 - Xcc-8004.5245.1 0.70 -1.9
4,985,470 - Xcc-8004.5245.1 0.70 -0.9
4,985,470 - Xcc-8004.5245.1 0.70 -0.0
4,985,470 - Xcc-8004.5245.1 0.70 +0.4
4,985,609 + Xcc-8004.5245.1 0.87 +0.6
4,985,609 + Xcc-8004.5245.1 0.87 -0.0
4,985,609 + Xcc-8004.5245.1 0.87 +1.6
4,985,609 + Xcc-8004.5245.1 0.87 -1.4
4,985,609 + Xcc-8004.5245.1 0.87 +0.6
4,985,609 + Xcc-8004.5245.1 0.87 +0.2
4,985,609 + Xcc-8004.5245.1 0.87 -0.5
4,985,609 + Xcc-8004.5245.1 0.87 -0.9
4,985,609 + Xcc-8004.5245.1 0.87 +0.7
4,985,609 + Xcc-8004.5245.1 0.87 -0.7
4,985,609 + Xcc-8004.5245.1 0.87 -0.1
4,985,609 + Xcc-8004.5245.1 0.87 +0.8
4,985,609 + Xcc-8004.5245.1 0.87 -0.0
4,985,609 + Xcc-8004.5245.1 0.87 +0.5
4,985,610 - Xcc-8004.5245.1 0.87 +1.4
4,985,610 - Xcc-8004.5245.1 0.87 +0.5
4,985,610 - Xcc-8004.5245.1 0.87 -0.9
4,985,610 - Xcc-8004.5245.1 0.87 +0.2
4,985,610 - Xcc-8004.5245.1 0.87 -1.1
4,985,610 - Xcc-8004.5245.1 0.87 +0.3
4,985,610 - Xcc-8004.5245.1 0.87 -0.3
4,985,610 - Xcc-8004.5245.1 0.87 -0.8
4,985,610 - Xcc-8004.5245.1 0.87 +0.7
4,985,610 - Xcc-8004.5245.1 0.87 -1.2
4,985,610 - Xcc-8004.5245.1 0.87 -0.5
4,985,610 - Xcc-8004.5245.1 0.87 -0.7
4,985,885 + -0.7
4,985,902 - +1.3
4,985,902 - +0.6
4,985,902 - -0.2
4,985,902 - +0.5
4,985,970 + -0.3
4,985,970 + -0.1
4,985,970 + -1.3
4,985,970 + +0.1
4,986,035 + -1.4
4,986,035 + +0.8
4,986,035 + -0.0
4,986,044 + +0.2
4,986,044 + +0.5
4,986,044 + +1.0
4,986,044 + +0.5
4,986,044 + -0.1
4,986,087 + -0.8
4,986,087 + +1.0
4,986,087 + +0.1
4,986,088 - +0.4
4,986,088 - +0.3
4,986,088 - +0.8
4,986,088 - +0.1
4,986,122 - +0.6
4,986,182 - +0.5
4,986,182 - +0.6
4,986,182 - -1.6
4,986,216 + -0.2
4,986,455 + Xcc-8004.5249.1 0.21 -0.9
4,986,903 + Xcc-8004.5249.1 0.59 -2.0
4,986,903 + Xcc-8004.5249.1 0.59 -0.2
4,986,903 + Xcc-8004.5249.1 0.59 -1.2
4,986,903 + Xcc-8004.5249.1 0.59 +0.1
4,986,904 - Xcc-8004.5249.1 0.59 -0.8
4,986,904 - Xcc-8004.5249.1 0.59 -1.0
4,986,904 - Xcc-8004.5249.1 0.59 -0.3
4,986,904 - Xcc-8004.5249.1 0.59 -0.6
4,986,904 - Xcc-8004.5249.1 0.59 +0.8
4,987,035 + Xcc-8004.5249.1 0.70 -1.6
4,987,036 - Xcc-8004.5249.1 0.70 -0.6
4,987,036 - Xcc-8004.5249.1 0.70 -1.0
4,987,036 - Xcc-8004.5249.1 0.70 +1.0
4,987,041 + Xcc-8004.5249.1 0.71 -1.3
4,987,041 + Xcc-8004.5249.1 0.71 +0.7
4,987,041 + Xcc-8004.5249.1 0.71 -0.6
4,987,041 + Xcc-8004.5249.1 0.71 -0.3
4,987,041 + Xcc-8004.5249.1 0.71 -1.7
4,987,041 + Xcc-8004.5249.1 0.71 +0.8
4,987,042 - Xcc-8004.5249.1 0.71 +0.1
4,987,042 - Xcc-8004.5249.1 0.71 -1.9
4,987,042 - Xcc-8004.5249.1 0.71 -0.5
4,987,073 - Xcc-8004.5249.1 0.73 -0.2
4,987,262 + Xcc-8004.5249.1 0.89 -1.6
4,987,331 + +0.1
4,987,332 - +0.1
4,987,441 + +0.7
4,987,445 + +0.0
4,987,445 + -1.4
4,987,445 + -2.6
4,987,445 + +0.3
4,987,445 + -0.6
4,987,445 + -1.2
4,987,445 + +0.3
4,987,445 + +0.1
4,987,446 - -0.0
4,987,446 - +1.6
4,987,446 - +0.5
4,987,446 - -0.9
4,987,446 - +0.1
4,987,446 - +0.1
4,987,446 - +0.4
4,987,446 - -1.6
4,987,446 - -1.0
4,987,446 - -0.1
4,987,446 - -1.8
4,987,477 + -1.4
4,987,477 + -0.1
4,987,478 - +2.4
4,987,500 + +0.7
4,987,500 + -0.0
4,987,501 - -1.2
4,987,501 - -0.4
4,987,511 + -0.4
4,987,512 - -0.2
4,987,850 + Xcc-8004.5250.1 0.14 +1.1

Or see this region's nucleotide sequence