Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4954.1 and Xcc-8004.4955.1 are separated by 242 nucleotides Xcc-8004.4955.1 and Xcc-8004.4956.1 overlap by 4 nucleotides Xcc-8004.4956.1 and Xcc-8004.4957.1 overlap by 4 nucleotides Xcc-8004.4957.1 and Xcc-8004.4958.1 overlap by 69 nucleotides
Xcc-8004.4954.1: Xcc-8004.4954.1 - Peptidase B (EC 3.4.11.23), at 4,706,661 to 4,708,031
Xcc-8004.4954.1
Xcc-8004.4955.1: Xcc-8004.4955.1 - Catalase (EC 1.11.1.6), at 4,708,274 to 4,709,365
Xcc-8004.4955.1
Xcc-8004.4956.1: Xcc-8004.4956.1 - Cytochrome B561, at 4,709,362 to 4,709,904
Xcc-8004.4956.1
Xcc-8004.4957.1: Xcc-8004.4957.1 - hypothetical protein, at 4,709,901 to 4,710,008
Xcc-8004.4957.1
Xcc-8004.4958.1: Xcc-8004.4958.1 - Mobile element protein, at 4,709,940 to 4,711,154
Xcc-8004.4958.1
Position (kb) 4708
4709
4710 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4707.615 kb on + strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.616 kb on - strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.798 kb on + strand, within Xcc-8004.4954.1 at 4707.799 kb on - strand, within Xcc-8004.4954.1 at 4707.807 kb on + strand, within Xcc-8004.4954.1 at 4707.808 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.880 kb on - strand, within Xcc-8004.4954.1 at 4707.893 kb on + strand, within Xcc-8004.4954.1 at 4707.930 kb on + strand at 4707.930 kb on + strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4707.931 kb on - strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.165 kb on + strand at 4708.166 kb on - strand at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.475 kb on - strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.883 kb on + strand, within Xcc-8004.4955.1 at 4708.884 kb on - strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4708.934 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.210 kb on + strand, within Xcc-8004.4955.1 at 4709.211 kb on - strand, within Xcc-8004.4955.1 at 4709.211 kb on - strand, within Xcc-8004.4955.1 at 4709.327 kb on - strand at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.635 kb on + strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.636 kb on - strand, within Xcc-8004.4956.1 at 4709.755 kb on + strand, within Xcc-8004.4956.1 at 4709.756 kb on - strand, within Xcc-8004.4956.1 at 4709.791 kb on + strand, within Xcc-8004.4956.1 at 4709.792 kb on - strand, within Xcc-8004.4956.1 at 4709.924 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.929 kb on - strand, within Xcc-8004.4957.1 at 4709.942 kb on - strand at 4709.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 4,707,615 + Xcc-8004.4954.1 0.70 +0.5 4,707,616 - Xcc-8004.4954.1 0.70 -0.6 4,707,616 - Xcc-8004.4954.1 0.70 +0.6 4,707,616 - Xcc-8004.4954.1 0.70 +0.2 4,707,798 + Xcc-8004.4954.1 0.83 +1.2 4,707,798 + Xcc-8004.4954.1 0.83 -0.3 4,707,798 + Xcc-8004.4954.1 0.83 +0.5 4,707,799 - Xcc-8004.4954.1 0.83 +0.3 4,707,807 + Xcc-8004.4954.1 0.84 -0.7 4,707,808 - Xcc-8004.4954.1 0.84 -1.9 4,707,880 - Xcc-8004.4954.1 0.89 +0.1 4,707,880 - Xcc-8004.4954.1 0.89 -3.0 4,707,893 + Xcc-8004.4954.1 0.90 -0.2 4,707,930 + +0.8 4,707,930 + -1.0 4,707,931 - -0.4 4,707,931 - -1.2 4,707,931 - +1.2 4,707,931 - +0.7 4,707,931 - -0.9 4,707,931 - -0.1 4,708,165 + +0.6 4,708,165 + -1.0 4,708,165 + -0.3 4,708,165 + +0.6 4,708,166 - +0.3 4,708,475 - Xcc-8004.4955.1 0.18 +0.5 4,708,475 - Xcc-8004.4955.1 0.18 -0.6 4,708,883 + Xcc-8004.4955.1 0.56 +0.4 4,708,883 + Xcc-8004.4955.1 0.56 +0.4 4,708,883 + Xcc-8004.4955.1 0.56 -0.4 4,708,884 - Xcc-8004.4955.1 0.56 -0.6 4,708,934 + Xcc-8004.4955.1 0.60 -0.5 4,708,934 + Xcc-8004.4955.1 0.60 -0.7 4,708,934 + Xcc-8004.4955.1 0.60 -0.3 4,709,210 + Xcc-8004.4955.1 0.86 +0.1 4,709,210 + Xcc-8004.4955.1 0.86 -0.2 4,709,210 + Xcc-8004.4955.1 0.86 +0.2 4,709,210 + Xcc-8004.4955.1 0.86 +0.5 4,709,211 - Xcc-8004.4955.1 0.86 -2.4 4,709,211 - Xcc-8004.4955.1 0.86 -0.3 4,709,327 - -0.3 4,709,635 + Xcc-8004.4956.1 0.50 +0.4 4,709,635 + Xcc-8004.4956.1 0.50 -0.7 4,709,635 + Xcc-8004.4956.1 0.50 -1.0 4,709,635 + Xcc-8004.4956.1 0.50 -0.8 4,709,636 - Xcc-8004.4956.1 0.50 +1.3 4,709,636 - Xcc-8004.4956.1 0.50 -0.1 4,709,636 - Xcc-8004.4956.1 0.50 -0.1 4,709,755 + Xcc-8004.4956.1 0.72 +0.0 4,709,756 - Xcc-8004.4956.1 0.73 -0.6 4,709,791 + Xcc-8004.4956.1 0.79 +0.3 4,709,792 - Xcc-8004.4956.1 0.79 -0.1 4,709,924 - Xcc-8004.4957.1 0.21 +0.4 4,709,929 - Xcc-8004.4957.1 0.26 -0.3 4,709,929 - Xcc-8004.4957.1 0.26 -2.3 4,709,929 - Xcc-8004.4957.1 0.26 +0.1 4,709,942 - +0.9 4,709,949 - +0.9
Or see this region's nucleotide sequence