Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4523.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
4,321,434	-		Xcc-8004.4521.1	0.83	-0.2
4,321,488	+		Xcc-8004.4521.1	0.89	+1.2
4,321,488	+		Xcc-8004.4521.1	0.89	-1.1
4,321,488	+		Xcc-8004.4521.1	0.89	-0.6
4,321,488	+		Xcc-8004.4521.1	0.89	+0.6
4,321,489	-		Xcc-8004.4521.1	0.89	+0.3
4,321,489	-		Xcc-8004.4521.1	0.89	-0.3
4,321,489	-		Xcc-8004.4521.1	0.89	-0.7
4,321,489	-		Xcc-8004.4521.1	0.89	-0.3
4,321,489	-		Xcc-8004.4521.1	0.89	+0.4
4,321,489	-		Xcc-8004.4521.1	0.89	-1.3
4,321,563	+				+0.6
4,321,563	+				+0.1
4,321,564	-				+0.8
4,321,565	+				-1.9
4,321,565	+				-0.7
4,321,565	+				-1.5
4,321,565	+				-0.9
4,321,565	+				-0.0
4,321,565	+				-0.5
4,321,565	+				+0.0
4,321,565	+				+0.0
4,321,565	+				-1.4
4,321,566	-				+0.5
4,321,566	-				-0.9
4,321,566	-				+1.1
4,321,566	-				-0.4
4,321,566	-				-0.8
4,321,566	-				-0.2
4,321,566	-				+0.5
4,321,566	-				-0.1
4,321,566	-				-0.6
4,321,566	-				+0.1
4,321,566	-				-2.3
4,321,566	-				+2.4
4,321,731	+		Xcc-8004.4522.1	0.31	-1.3
4,321,732	-		Xcc-8004.4522.1	0.31	-0.8
4,321,816	+		Xcc-8004.4522.1	0.49	+0.2
4,321,816	+		Xcc-8004.4522.1	0.49	+0.6
4,321,816	+		Xcc-8004.4522.1	0.49	-0.0
4,321,817	-		Xcc-8004.4522.1	0.49	+0.2
4,321,817	-		Xcc-8004.4522.1	0.49	-1.6
4,321,817	-		Xcc-8004.4522.1	0.49	+1.2
4,321,817	-		Xcc-8004.4522.1	0.49	+0.6
4,321,817	-		Xcc-8004.4522.1	0.49	-1.3
4,321,817	-		Xcc-8004.4522.1	0.49	-2.1
4,321,817	-		Xcc-8004.4522.1	0.49	+0.6
4,321,930	+		Xcc-8004.4522.1	0.73	+0.3
4,321,930	+		Xcc-8004.4522.1	0.73	-1.4
4,321,930	+		Xcc-8004.4522.1	0.73	+1.3
4,321,931	-		Xcc-8004.4522.1	0.73	-0.2
4,321,931	-		Xcc-8004.4522.1	0.73	-1.1
4,321,948	+		Xcc-8004.4522.1	0.76	-1.0
4,321,948	+		Xcc-8004.4522.1	0.76	+0.2
4,321,948	+		Xcc-8004.4522.1	0.76	+0.1
4,321,948	+		Xcc-8004.4522.1	0.76	-0.3
4,321,948	+		Xcc-8004.4522.1	0.76	+0.3
4,321,948	+		Xcc-8004.4522.1	0.76	+0.1
4,321,948	+		Xcc-8004.4522.1	0.76	+0.4
4,321,948	+		Xcc-8004.4522.1	0.76	-0.8
4,321,949	-		Xcc-8004.4522.1	0.77	+0.2
4,321,949	-		Xcc-8004.4522.1	0.77	+0.4
4,321,949	-		Xcc-8004.4522.1	0.77	-0.2
4,321,949	-		Xcc-8004.4522.1	0.77	+1.4
4,321,949	-		Xcc-8004.4522.1	0.77	+0.3
4,321,949	-		Xcc-8004.4522.1	0.77	-0.4
4,321,949	-		Xcc-8004.4522.1	0.77	-0.3
4,321,949	-		Xcc-8004.4522.1	0.77	+0.3
4,321,959	-		Xcc-8004.4522.1	0.79	+0.8
4,321,959	-		Xcc-8004.4522.1	0.79	-1.8
4,321,969	-		Xcc-8004.4522.1	0.81	+0.9
4,321,969	-		Xcc-8004.4522.1	0.81	+0.3
4,322,079	-				-0.3
4,322,144	+				+0.0
4,322,144	+				+1.5
4,322,144	+				-0.5
4,322,144	+				+0.1
4,322,144	+				+0.5
4,322,144	+				+0.3
4,322,144	+				+0.1
4,322,144	+				-0.5
4,322,144	+				-0.2
4,322,144	+				+0.0
4,322,144	+				+0.8
4,322,144	+				+0.3
4,322,144	+				-0.7
4,322,145	-				+0.6
4,322,145	-				+1.4
4,322,145	-				-0.1
4,322,145	-				-0.6
4,322,145	-				+0.3
4,322,145	-				-0.4
4,322,145	-				-1.8
4,322,145	-				-0.2
4,322,145	-				-2.0
4,322,145	-				-0.5
4,322,145	-				-0.7
4,322,145	-				+0.5
4,322,169	-				+0.2
4,322,219	+		Xcc-8004.4523.1	0.13	+0.0
4,322,219	+		Xcc-8004.4523.1	0.13	-0.5
4,322,220	-		Xcc-8004.4523.1	0.14	-1.0
4,322,220	-		Xcc-8004.4523.1	0.14	-0.2
4,322,555	+		Xcc-8004.4523.1	0.43	+0.6
4,323,146	+				-0.7
4,323,147	-				-0.3
4,323,155	+				+0.3
4,323,155	+				-1.0
4,323,193	+				-0.1
4,323,193	+				-0.9
4,323,194	-				+0.7
4,323,194	-				-2.4
4,323,197	+				+0.3
4,323,198	-				+0.8
4,323,198	-				-1.0
4,323,217	-				-0.6
4,323,448	+		Xcc-8004.4524.1	0.57	-1.0
4,323,448	+		Xcc-8004.4524.1	0.57	-0.2
4,323,448	+		Xcc-8004.4524.1	0.57	-0.5
4,323,448	+		Xcc-8004.4524.1	0.57	-1.7
4,323,448	+		Xcc-8004.4524.1	0.57	+0.0
4,323,448	+		Xcc-8004.4524.1	0.57	+0.3
4,323,449	-		Xcc-8004.4524.1	0.58	+0.1
4,323,449	-		Xcc-8004.4524.1	0.58	-0.1
4,323,449	-		Xcc-8004.4524.1	0.58	-0.1
4,323,449	-		Xcc-8004.4524.1	0.58	-0.5
4,323,449	-		Xcc-8004.4524.1	0.58	-1.4
4,323,449	-		Xcc-8004.4524.1	0.58	-0.1
4,323,452	+		Xcc-8004.4524.1	0.60	-1.2
4,323,452	+		Xcc-8004.4524.1	0.60	-0.3
4,323,453	-		Xcc-8004.4524.1	0.61	+1.1
4,323,453	-		Xcc-8004.4524.1	0.61	-0.3
4,323,453	-		Xcc-8004.4524.1	0.61	-1.5
4,323,453	-		Xcc-8004.4524.1	0.61	-1.4
4,323,533	+				+1.6
4,323,533	+				-0.7
4,323,533	+				+0.4
4,323,534	-				-0.7
4,323,534	-				-0.1
4,323,534	-				-0.2
4,323,534	-				-0.0
4,323,615	+				+0.7
4,323,616	-				+0.5
4,323,616	-				-0.4
4,323,720	+				+0.1
4,323,721	-				-0.3
4,323,721	-				+1.5
4,323,810	+		Xcc-8004.4525.1	0.13	+0.0
4,323,811	-		Xcc-8004.4525.1	0.14	+0.1
4,323,846	+		Xcc-8004.4525.1	0.19	+0.1
4,323,846	+		Xcc-8004.4525.1	0.19	-0.3
4,323,847	-		Xcc-8004.4525.1	0.19	-1.4
4,323,847	-		Xcc-8004.4525.1	0.19	+0.2
4,323,847	-		Xcc-8004.4525.1	0.19	-0.8
4,324,164	+		Xcc-8004.4525.1	0.66	+0.8
4,324,165	-		Xcc-8004.4525.1	0.66	+0.6
4,324,165	-		Xcc-8004.4525.1	0.66	-0.8
4,324,165	-		Xcc-8004.4525.1	0.66	-0.9