Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4506.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4503.1 and Xcc-8004.4505.1 are separated by 81 nucleotidesXcc-8004.4505.1 and Xcc-8004.4506.1 overlap by 1 nucleotidesXcc-8004.4506.1 and Xcc-8004.4507.1 overlap by 4 nucleotides Xcc-8004.4503.1: Xcc-8004.4503.1 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 4,306,746 to 4,307,780 Xcc-8004.4503.1 Xcc-8004.4505.1: Xcc-8004.4505.1 - membrane protein WxcE, at 4,307,862 to 4,308,497 Xcc-8004.4505.1 Xcc-8004.4506.1: Xcc-8004.4506.1 - membrane protein WxcD, at 4,308,497 to 4,310,263 Xcc-8004.4506.1 Xcc-8004.4507.1: Xcc-8004.4507.1 - Glycosyltransferase, at 4,310,260 to 4,311,339 Xcc-8004.4507.1 Position (kb) 4308 4309 4310 4311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4307.573 kb on + strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.574 kb on - strand, within Xcc-8004.4503.1at 4307.605 kb on + strand, within Xcc-8004.4503.1at 4307.686 kb on + strandat 4307.686 kb on + strandat 4307.687 kb on - strandat 4307.801 kb on + strandat 4307.802 kb on - strandat 4307.808 kb on + strandat 4307.808 kb on + strandat 4307.808 kb on + strandat 4307.809 kb on - strandat 4307.941 kb on + strand, within Xcc-8004.4505.1at 4307.942 kb on - strand, within Xcc-8004.4505.1at 4308.015 kb on - strand, within Xcc-8004.4505.1at 4308.117 kb on + strand, within Xcc-8004.4505.1at 4308.136 kb on - strand, within Xcc-8004.4505.1at 4308.146 kb on + strand, within Xcc-8004.4505.1at 4308.167 kb on + strand, within Xcc-8004.4505.1at 4308.221 kb on + strand, within Xcc-8004.4505.1at 4308.236 kb on + strand, within Xcc-8004.4505.1at 4308.236 kb on + strand, within Xcc-8004.4505.1at 4308.237 kb on - strand, within Xcc-8004.4505.1at 4308.237 kb on - strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.366 kb on + strand, within Xcc-8004.4505.1at 4308.367 kb on - strand, within Xcc-8004.4505.1at 4308.398 kb on + strand, within Xcc-8004.4505.1at 4308.498 kb on + strandat 4308.498 kb on + strandat 4308.498 kb on + strandat 4308.518 kb on + strandat 4308.519 kb on - strandat 4308.629 kb on + strandat 4308.629 kb on + strandat 4308.630 kb on - strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.631 kb on + strandat 4308.632 kb on - strandat 4308.632 kb on - strandat 4308.663 kb on - strandat 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.733 kb on + strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.734 kb on - strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.735 kb on + strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.736 kb on - strand, within Xcc-8004.4506.1at 4308.737 kb on + strand, within Xcc-8004.4506.1at 4308.737 kb on + strand, within Xcc-8004.4506.1at 4308.738 kb on - strand, within Xcc-8004.4506.1at 4308.738 kb on - strand, within Xcc-8004.4506.1at 4308.752 kb on + strand, within Xcc-8004.4506.1at 4308.752 kb on + strand, within Xcc-8004.4506.1at 4308.753 kb on - strand, within Xcc-8004.4506.1at 4308.905 kb on - strand, within Xcc-8004.4506.1at 4308.945 kb on + strand, within Xcc-8004.4506.1at 4308.946 kb on - strand, within Xcc-8004.4506.1at 4309.007 kb on + strand, within Xcc-8004.4506.1at 4309.102 kb on + strand, within Xcc-8004.4506.1at 4309.102 kb on + strand, within Xcc-8004.4506.1at 4309.103 kb on - strand, within Xcc-8004.4506.1at 4309.144 kb on - strand, within Xcc-8004.4506.1at 4309.169 kb on + strand, within Xcc-8004.4506.1at 4309.169 kb on + strand, within Xcc-8004.4506.1at 4309.170 kb on - strand, within Xcc-8004.4506.1at 4309.195 kb on + strand, within Xcc-8004.4506.1at 4309.195 kb on + strand, within Xcc-8004.4506.1at 4309.195 kb on + strand, within Xcc-8004.4506.1at 4309.196 kb on - strand, within Xcc-8004.4506.1at 4309.213 kb on - strand, within Xcc-8004.4506.1at 4309.219 kb on - strand, within Xcc-8004.4506.1at 4309.219 kb on - strand, within Xcc-8004.4506.1at 4309.320 kb on + strand, within Xcc-8004.4506.1at 4309.321 kb on - strand, within Xcc-8004.4506.1at 4309.441 kb on + strand, within Xcc-8004.4506.1at 4309.442 kb on - strand, within Xcc-8004.4506.1at 4309.551 kb on - strand, within Xcc-8004.4506.1at 4309.596 kb on - strand, within Xcc-8004.4506.1at 4309.596 kb on - strand, within Xcc-8004.4506.1at 4309.657 kb on + strand, within Xcc-8004.4506.1at 4309.658 kb on - strand, within Xcc-8004.4506.1at 4309.699 kb on - strand, within Xcc-8004.4506.1at 4309.699 kb on - strand, within Xcc-8004.4506.1at 4309.717 kb on + strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.983 kb on - strand, within Xcc-8004.4506.1at 4310.020 kb on + strand, within Xcc-8004.4506.1at 4310.021 kb on - strand, within Xcc-8004.4506.1at 4310.068 kb on - strand, within Xcc-8004.4506.1at 4310.157 kb on - strandat 4310.313 kb on + strandat 4310.314 kb on - strandat 4310.638 kb on + strand, within Xcc-8004.4507.1at 4310.698 kb on - strand, within Xcc-8004.4507.1at 4310.755 kb on + strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.786 kb on + strand, within Xcc-8004.4507.1at 4310.799 kb on + strand, within Xcc-8004.4507.1at 4310.829 kb on - strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4311.008 kb on + strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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4,307,573 + Xcc-8004.4503.1 0.80 -2.0
4,307,574 - Xcc-8004.4503.1 0.80 -2.5
4,307,574 - Xcc-8004.4503.1 0.80 +0.2
4,307,574 - Xcc-8004.4503.1 0.80 -1.1
4,307,605 + Xcc-8004.4503.1 0.83 -0.4
4,307,686 + -2.4
4,307,686 + -1.2
4,307,687 - -0.3
4,307,801 + -1.2
4,307,802 - +0.5
4,307,808 + -2.6
4,307,808 + -0.8
4,307,808 + -2.0
4,307,809 - -0.9
4,307,941 + Xcc-8004.4505.1 0.12 -0.7
4,307,942 - Xcc-8004.4505.1 0.13 -1.8
4,308,015 - Xcc-8004.4505.1 0.24 -0.4
4,308,117 + Xcc-8004.4505.1 0.40 -0.5
4,308,136 - Xcc-8004.4505.1 0.43 +0.4
4,308,146 + Xcc-8004.4505.1 0.45 -0.6
4,308,167 + Xcc-8004.4505.1 0.48 +0.5
4,308,221 + Xcc-8004.4505.1 0.56 -0.4
4,308,236 + Xcc-8004.4505.1 0.59 -1.5
4,308,236 + Xcc-8004.4505.1 0.59 -0.6
4,308,237 - Xcc-8004.4505.1 0.59 +0.6
4,308,237 - Xcc-8004.4505.1 0.59 -0.9
4,308,366 + Xcc-8004.4505.1 0.79 +0.2
4,308,366 + Xcc-8004.4505.1 0.79 +0.4
4,308,366 + Xcc-8004.4505.1 0.79 -1.3
4,308,367 - Xcc-8004.4505.1 0.79 -2.4
4,308,398 + Xcc-8004.4505.1 0.84 -0.6
4,308,498 + -0.1
4,308,498 + +0.7
4,308,498 + +0.1
4,308,518 + +0.5
4,308,519 - -0.9
4,308,629 + -0.2
4,308,629 + +0.5
4,308,630 - -0.7
4,308,631 + +0.5
4,308,631 + -0.7
4,308,631 + -0.7
4,308,631 + -1.4
4,308,632 - -0.1
4,308,632 - -0.5
4,308,663 - -1.2
4,308,733 + Xcc-8004.4506.1 0.13 -0.5
4,308,733 + Xcc-8004.4506.1 0.13 -1.6
4,308,733 + Xcc-8004.4506.1 0.13 -1.1
4,308,733 + Xcc-8004.4506.1 0.13 -1.0
4,308,733 + Xcc-8004.4506.1 0.13 -0.4
4,308,733 + Xcc-8004.4506.1 0.13 -1.5
4,308,734 - Xcc-8004.4506.1 0.13 -0.3
4,308,734 - Xcc-8004.4506.1 0.13 -1.3
4,308,734 - Xcc-8004.4506.1 0.13 -0.0
4,308,734 - Xcc-8004.4506.1 0.13 +0.6
4,308,735 + Xcc-8004.4506.1 0.13 -0.2
4,308,735 + Xcc-8004.4506.1 0.13 -0.9
4,308,735 + Xcc-8004.4506.1 0.13 -1.2
4,308,735 + Xcc-8004.4506.1 0.13 -0.1
4,308,735 + Xcc-8004.4506.1 0.13 -1.0
4,308,736 - Xcc-8004.4506.1 0.14 +0.8
4,308,736 - Xcc-8004.4506.1 0.14 -0.9
4,308,736 - Xcc-8004.4506.1 0.14 -0.3
4,308,736 - Xcc-8004.4506.1 0.14 +0.3
4,308,737 + Xcc-8004.4506.1 0.14 -0.6
4,308,737 + Xcc-8004.4506.1 0.14 -0.3
4,308,738 - Xcc-8004.4506.1 0.14 -1.1
4,308,738 - Xcc-8004.4506.1 0.14 -2.8
4,308,752 + Xcc-8004.4506.1 0.14 +1.3
4,308,752 + Xcc-8004.4506.1 0.14 +0.5
4,308,753 - Xcc-8004.4506.1 0.14 -1.2
4,308,905 - Xcc-8004.4506.1 0.23 +0.7
4,308,945 + Xcc-8004.4506.1 0.25 +0.5
4,308,946 - Xcc-8004.4506.1 0.25 +0.4
4,309,007 + Xcc-8004.4506.1 0.29 -0.1
4,309,102 + Xcc-8004.4506.1 0.34 -2.3
4,309,102 + Xcc-8004.4506.1 0.34 -0.7
4,309,103 - Xcc-8004.4506.1 0.34 -1.4
4,309,144 - Xcc-8004.4506.1 0.37 -2.0
4,309,169 + Xcc-8004.4506.1 0.38 -1.7
4,309,169 + Xcc-8004.4506.1 0.38 -1.3
4,309,170 - Xcc-8004.4506.1 0.38 -1.8
4,309,195 + Xcc-8004.4506.1 0.40 -2.0
4,309,195 + Xcc-8004.4506.1 0.40 +1.2
4,309,195 + Xcc-8004.4506.1 0.40 +0.7
4,309,196 - Xcc-8004.4506.1 0.40 -0.6
4,309,213 - Xcc-8004.4506.1 0.41 -2.2
4,309,219 - Xcc-8004.4506.1 0.41 -1.4
4,309,219 - Xcc-8004.4506.1 0.41 -3.1
4,309,320 + Xcc-8004.4506.1 0.47 -1.3
4,309,321 - Xcc-8004.4506.1 0.47 -2.5
4,309,441 + Xcc-8004.4506.1 0.53 -1.7
4,309,442 - Xcc-8004.4506.1 0.53 -1.3
4,309,551 - Xcc-8004.4506.1 0.60 +1.9
4,309,596 - Xcc-8004.4506.1 0.62 -0.7
4,309,596 - Xcc-8004.4506.1 0.62 -2.2
4,309,657 + Xcc-8004.4506.1 0.66 -2.2
4,309,658 - Xcc-8004.4506.1 0.66 -1.8
4,309,699 - Xcc-8004.4506.1 0.68 -1.5
4,309,699 - Xcc-8004.4506.1 0.68 -2.3
4,309,717 + Xcc-8004.4506.1 0.69 -1.5
4,309,970 - Xcc-8004.4506.1 0.83 -1.5
4,309,970 - Xcc-8004.4506.1 0.83 -0.5
4,309,970 - Xcc-8004.4506.1 0.83 -1.9
4,309,982 + Xcc-8004.4506.1 0.84 -0.3
4,309,982 + Xcc-8004.4506.1 0.84 -0.7
4,309,982 + Xcc-8004.4506.1 0.84 -0.6
4,309,982 + Xcc-8004.4506.1 0.84 -3.4
4,309,983 - Xcc-8004.4506.1 0.84 -2.8
4,310,020 + Xcc-8004.4506.1 0.86 -2.2
4,310,021 - Xcc-8004.4506.1 0.86 -1.8
4,310,068 - Xcc-8004.4506.1 0.89 -1.7
4,310,157 - -1.7
4,310,313 + -0.7
4,310,314 - -0.4
4,310,638 + Xcc-8004.4507.1 0.35 +0.2
4,310,698 - Xcc-8004.4507.1 0.41 -1.5
4,310,755 + Xcc-8004.4507.1 0.46 -0.1
4,310,756 - Xcc-8004.4507.1 0.46 -0.4
4,310,756 - Xcc-8004.4507.1 0.46 -0.0
4,310,778 - Xcc-8004.4507.1 0.48 -2.4
4,310,778 - Xcc-8004.4507.1 0.48 +0.3
4,310,786 + Xcc-8004.4507.1 0.49 -2.4
4,310,799 + Xcc-8004.4507.1 0.50 +0.2
4,310,829 - Xcc-8004.4507.1 0.53 -2.4
4,310,830 + Xcc-8004.4507.1 0.53 +0.6
4,310,830 + Xcc-8004.4507.1 0.53 -3.3
4,311,008 + Xcc-8004.4507.1 0.69 -2.1
4,311,009 - Xcc-8004.4507.1 0.69 +0.9
4,311,009 - Xcc-8004.4507.1 0.69 -0.7
4,311,065 + Xcc-8004.4507.1 0.75 -1.9
4,311,065 + Xcc-8004.4507.1 0.75 -0.5
4,311,066 - Xcc-8004.4507.1 0.75 -1.0
4,311,066 - Xcc-8004.4507.1 0.75 -1.4
4,311,066 - Xcc-8004.4507.1 0.75 +1.5
4,311,092 - Xcc-8004.4507.1 0.77 -0.8
4,311,092 - Xcc-8004.4507.1 0.77 +0.3

Or see this region's nucleotide sequence