Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4288.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4286.1 and Xcc-8004.4287.1 are separated by 99 nucleotidesXcc-8004.4287.1 and Xcc-8004.4288.1 overlap by 149 nucleotidesXcc-8004.4288.1 and Xcc-8004.4289.1 overlap by 4 nucleotides Xcc-8004.4286.1: Xcc-8004.4286.1 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,101,115 to 4,101,828 Xcc-8004.4286.1 Xcc-8004.4287.1: Xcc-8004.4287.1 - Arylesterase precursor (EC 3.1.1.2), at 4,101,928 to 4,102,581 Xcc-8004.4287.1 Xcc-8004.4288.1: Xcc-8004.4288.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,102,433 to 4,103,308 Xcc-8004.4288.1 Xcc-8004.4289.1: Xcc-8004.4289.1 - ABC transporter, permease protein, putative, at 4,103,305 to 4,105,788 Xcc-8004.4289.1 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -3 -2 -1 0 1at 4101.509 kb on + strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.719 kb on + strand, within Xcc-8004.4286.1at 4101.719 kb on + strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.771 kb on + strandat 4101.772 kb on - strandat 4102.076 kb on + strand, within Xcc-8004.4287.1at 4102.076 kb on + strand, within Xcc-8004.4287.1at 4102.077 kb on - strand, within Xcc-8004.4287.1at 4102.077 kb on - strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.559 kb on + strandat 4102.560 kb on - strandat 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4103.033 kb on + strand, within Xcc-8004.4288.1at 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.251 kb on + strandat 4103.252 kb on - strandat 4103.252 kb on - strandat 4103.252 kb on - strandat 4103.255 kb on + strandat 4103.255 kb on + strandat 4103.255 kb on + strandat 4103.255 kb on + strandat 4103.256 kb on - strandat 4103.256 kb on - strandat 4103.256 kb on - strandat 4103.722 kb on + strand, within Xcc-8004.4289.1at 4103.722 kb on + strand, within Xcc-8004.4289.1at 4103.723 kb on - strand, within Xcc-8004.4289.1at 4103.723 kb on - strand, within Xcc-8004.4289.1at 4103.723 kb on - strand, within Xcc-8004.4289.1at 4103.723 kb on - strand, within Xcc-8004.4289.1at 4103.884 kb on - strand, within Xcc-8004.4289.1at 4103.926 kb on + strand, within Xcc-8004.4289.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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4,101,509 + Xcc-8004.4286.1 0.55 -0.1
4,101,510 - Xcc-8004.4286.1 0.55 -0.2
4,101,510 - Xcc-8004.4286.1 0.55 +1.2
4,101,510 - Xcc-8004.4286.1 0.55 +0.2
4,101,510 - Xcc-8004.4286.1 0.55 +0.2
4,101,510 - Xcc-8004.4286.1 0.55 -0.7
4,101,671 + Xcc-8004.4286.1 0.78 -0.6
4,101,671 + Xcc-8004.4286.1 0.78 -0.7
4,101,671 + Xcc-8004.4286.1 0.78 -0.1
4,101,671 + Xcc-8004.4286.1 0.78 -2.3
4,101,671 + Xcc-8004.4286.1 0.78 -1.3
4,101,671 + Xcc-8004.4286.1 0.78 +0.5
4,101,671 + Xcc-8004.4286.1 0.78 +1.6
4,101,671 + Xcc-8004.4286.1 0.78 +0.9
4,101,671 + Xcc-8004.4286.1 0.78 -1.3
4,101,671 + Xcc-8004.4286.1 0.78 -1.7
4,101,671 + Xcc-8004.4286.1 0.78 -0.2
4,101,671 + Xcc-8004.4286.1 0.78 -1.2
4,101,672 - Xcc-8004.4286.1 0.78 -1.7
4,101,672 - Xcc-8004.4286.1 0.78 +1.0
4,101,672 - Xcc-8004.4286.1 0.78 -0.5
4,101,672 - Xcc-8004.4286.1 0.78 -1.2
4,101,672 - Xcc-8004.4286.1 0.78 -2.1
4,101,719 + Xcc-8004.4286.1 0.85 +0.0
4,101,719 + Xcc-8004.4286.1 0.85 +1.0
4,101,720 - Xcc-8004.4286.1 0.85 +0.1
4,101,720 - Xcc-8004.4286.1 0.85 -0.5
4,101,720 - Xcc-8004.4286.1 0.85 -1.1
4,101,720 - Xcc-8004.4286.1 0.85 +0.5
4,101,771 + -2.5
4,101,772 - -0.4
4,102,076 + Xcc-8004.4287.1 0.23 -0.3
4,102,076 + Xcc-8004.4287.1 0.23 -0.7
4,102,077 - Xcc-8004.4287.1 0.23 +0.7
4,102,077 - Xcc-8004.4287.1 0.23 -1.1
4,102,097 + Xcc-8004.4287.1 0.26 -0.1
4,102,097 + Xcc-8004.4287.1 0.26 -1.1
4,102,097 + Xcc-8004.4287.1 0.26 -0.1
4,102,097 + Xcc-8004.4287.1 0.26 +0.7
4,102,097 + Xcc-8004.4287.1 0.26 -0.3
4,102,097 + Xcc-8004.4287.1 0.26 -1.0
4,102,097 + Xcc-8004.4287.1 0.26 -0.9
4,102,098 - Xcc-8004.4287.1 0.26 -3.1
4,102,098 - Xcc-8004.4287.1 0.26 -1.1
4,102,098 - Xcc-8004.4287.1 0.26 -0.3
4,102,098 - Xcc-8004.4287.1 0.26 +0.4
4,102,098 - Xcc-8004.4287.1 0.26 -0.1
4,102,098 - Xcc-8004.4287.1 0.26 -0.7
4,102,098 - Xcc-8004.4287.1 0.26 +0.3
4,102,098 - Xcc-8004.4287.1 0.26 +1.6
4,102,098 - Xcc-8004.4287.1 0.26 +1.5
4,102,098 - Xcc-8004.4287.1 0.26 -0.1
4,102,133 + Xcc-8004.4287.1 0.31 -0.9
4,102,133 + Xcc-8004.4287.1 0.31 +0.0
4,102,133 + Xcc-8004.4287.1 0.31 -1.3
4,102,133 + Xcc-8004.4287.1 0.31 +0.3
4,102,134 - Xcc-8004.4287.1 0.31 +0.4
4,102,134 - Xcc-8004.4287.1 0.31 -0.4
4,102,134 - Xcc-8004.4287.1 0.31 -0.1
4,102,134 - Xcc-8004.4287.1 0.31 +0.3
4,102,134 - Xcc-8004.4287.1 0.31 -0.1
4,102,134 - Xcc-8004.4287.1 0.31 -2.0
4,102,559 + -0.7
4,102,560 - +0.7
4,102,729 + Xcc-8004.4288.1 0.34 +0.5
4,102,729 + Xcc-8004.4288.1 0.34 -1.7
4,102,729 + Xcc-8004.4288.1 0.34 -0.7
4,102,729 + Xcc-8004.4288.1 0.34 -0.1
4,102,730 - Xcc-8004.4288.1 0.34 -0.7
4,102,730 - Xcc-8004.4288.1 0.34 +0.1
4,102,730 - Xcc-8004.4288.1 0.34 -1.8
4,102,730 - Xcc-8004.4288.1 0.34 -1.3
4,103,033 + Xcc-8004.4288.1 0.68 -0.4
4,103,251 + -0.6
4,103,251 + +0.7
4,103,251 + -0.2
4,103,251 + +0.3
4,103,251 + -0.9
4,103,251 + +1.2
4,103,251 + +0.9
4,103,251 + +0.6
4,103,252 - -0.1
4,103,252 - +0.2
4,103,252 - -1.6
4,103,255 + +0.6
4,103,255 + +0.8
4,103,255 + -0.9
4,103,255 + -0.0
4,103,256 - -0.2
4,103,256 - -0.4
4,103,256 - -0.1
4,103,722 + Xcc-8004.4289.1 0.17 +0.3
4,103,722 + Xcc-8004.4289.1 0.17 -2.1
4,103,723 - Xcc-8004.4289.1 0.17 -0.2
4,103,723 - Xcc-8004.4289.1 0.17 +0.6
4,103,723 - Xcc-8004.4289.1 0.17 +0.4
4,103,723 - Xcc-8004.4289.1 0.17 +1.4
4,103,884 - Xcc-8004.4289.1 0.23 +1.1
4,103,926 + Xcc-8004.4289.1 0.25 -0.5

Or see this region's nucleotide sequence