Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4078.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4076.1 and Xcc-8004.4077.1 are separated by 183 nucleotidesXcc-8004.4077.1 and Xcc-8004.4078.1 are separated by 39 nucleotidesXcc-8004.4078.1 and Xcc-8004.4079.1 are separated by 17 nucleotidesXcc-8004.4079.1 and Xcc-8004.4080.1 are separated by 171 nucleotides Xcc-8004.4076.1: Xcc-8004.4076.1 - hypothetical protein, at 3,933,066 to 3,934,334 Xcc-8004.4076.1 Xcc-8004.4077.1: Xcc-8004.4077.1 - putative; ORF located using Glimmer/Genemark, at 3,934,518 to 3,935,066 Xcc-8004.4077.1 Xcc-8004.4078.1: Xcc-8004.4078.1 - putative; ORF located using Glimmer/Genemark, at 3,935,106 to 3,935,681 Xcc-8004.4078.1 Xcc-8004.4079.1: Xcc-8004.4079.1 - hypothetical protein, at 3,935,699 to 3,936,343 Xcc-8004.4079.1 Xcc-8004.4080.1: Xcc-8004.4080.1 - Phospholipase C, at 3,936,515 to 3,938,596 Xcc-8004.4080.1 Position (kb) 3935 3936Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3934.341 kb on - strandat 3934.531 kb on + strandat 3934.532 kb on - strandat 3934.532 kb on - strandat 3934.532 kb on - strandat 3934.532 kb on - strandat 3934.579 kb on - strand, within Xcc-8004.4077.1at 3934.579 kb on - strand, within Xcc-8004.4077.1at 3934.636 kb on + strand, within Xcc-8004.4077.1at 3934.637 kb on - strand, within Xcc-8004.4077.1at 3934.637 kb on - strand, within Xcc-8004.4077.1at 3934.637 kb on - strand, within Xcc-8004.4077.1at 3934.678 kb on + strand, within Xcc-8004.4077.1at 3934.678 kb on + strand, within Xcc-8004.4077.1at 3934.723 kb on + strand, within Xcc-8004.4077.1at 3934.723 kb on + strand, within Xcc-8004.4077.1at 3934.724 kb on - strand, within Xcc-8004.4077.1at 3934.724 kb on - strand, within Xcc-8004.4077.1at 3934.724 kb on - strand, within Xcc-8004.4077.1at 3934.847 kb on + strand, within Xcc-8004.4077.1at 3934.848 kb on - strand, within Xcc-8004.4077.1at 3934.848 kb on - strand, within Xcc-8004.4077.1at 3935.085 kb on + strandat 3935.085 kb on + strandat 3935.107 kb on + strandat 3935.195 kb on - strand, within Xcc-8004.4078.1at 3935.195 kb on - strand, within Xcc-8004.4078.1at 3935.195 kb on - strand, within Xcc-8004.4078.1at 3935.260 kb on + strand, within Xcc-8004.4078.1at 3935.261 kb on - strand, within Xcc-8004.4078.1at 3935.619 kb on - strand, within Xcc-8004.4078.1at 3935.700 kb on + strandat 3935.700 kb on + strandat 3935.701 kb on - strandat 3935.702 kb on + strandat 3935.702 kb on + strandat 3935.702 kb on + strandat 3935.703 kb on - strandat 3936.002 kb on + strand, within Xcc-8004.4079.1at 3936.002 kb on + strand, within Xcc-8004.4079.1at 3936.003 kb on - strand, within Xcc-8004.4079.1at 3936.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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3,934,341 - -0.0
3,934,531 + -0.0
3,934,532 - -0.2
3,934,532 - -1.3
3,934,532 - -0.3
3,934,532 - -0.3
3,934,579 - Xcc-8004.4077.1 0.11 -0.6
3,934,579 - Xcc-8004.4077.1 0.11 +0.1
3,934,636 + Xcc-8004.4077.1 0.21 -0.4
3,934,637 - Xcc-8004.4077.1 0.22 +1.4
3,934,637 - Xcc-8004.4077.1 0.22 -0.2
3,934,637 - Xcc-8004.4077.1 0.22 -0.1
3,934,678 + Xcc-8004.4077.1 0.29 +0.5
3,934,678 + Xcc-8004.4077.1 0.29 -1.1
3,934,723 + Xcc-8004.4077.1 0.37 +1.6
3,934,723 + Xcc-8004.4077.1 0.37 -0.7
3,934,724 - Xcc-8004.4077.1 0.38 -0.1
3,934,724 - Xcc-8004.4077.1 0.38 +0.2
3,934,724 - Xcc-8004.4077.1 0.38 -0.4
3,934,847 + Xcc-8004.4077.1 0.60 +0.3
3,934,848 - Xcc-8004.4077.1 0.60 -0.0
3,934,848 - Xcc-8004.4077.1 0.60 +1.2
3,935,085 + -0.2
3,935,085 + +0.5
3,935,107 + +1.0
3,935,195 - Xcc-8004.4078.1 0.15 +0.7
3,935,195 - Xcc-8004.4078.1 0.15 +1.3
3,935,195 - Xcc-8004.4078.1 0.15 -0.1
3,935,260 + Xcc-8004.4078.1 0.27 +1.6
3,935,261 - Xcc-8004.4078.1 0.27 -0.5
3,935,619 - Xcc-8004.4078.1 0.89 +0.1
3,935,700 + +0.9
3,935,700 + +2.4
3,935,701 - -0.9
3,935,702 + -1.7
3,935,702 + -2.4
3,935,702 + -0.5
3,935,703 - -0.5
3,936,002 + Xcc-8004.4079.1 0.47 -1.4
3,936,002 + Xcc-8004.4079.1 0.47 -0.1
3,936,003 - Xcc-8004.4079.1 0.47 -2.9
3,936,621 + +0.6

Or see this region's nucleotide sequence