Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3050.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3049.1 and Xcc-8004.3050.1 overlap by 4 nucleotidesXcc-8004.3050.1 and Xcc-8004.3051.1 are separated by 107 nucleotidesXcc-8004.3051.1 and Xcc-8004.3052.1 overlap by 4 nucleotides Xcc-8004.3049.1: Xcc-8004.3049.1 - Glucose-6-phosphate isomerase (EC 5.3.1.9), at 2,982,376 to 2,983,890 Xcc-8004.3049.1 Xcc-8004.3050.1: Xcc-8004.3050.1 - Aspartate 1-decarboxylase (EC 4.1.1.11), at 2,983,887 to 2,984,267 Xcc-8004.3050.1 Xcc-8004.3051.1: Xcc-8004.3051.1 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 2,984,375 to 2,985,229 Xcc-8004.3051.1 Xcc-8004.3052.1: Xcc-8004.3052.1 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 2,985,226 to 2,986,041 Xcc-8004.3052.1 Position (kb) 2983 2984 2985Strain fitness (log2 ratio) -3 -2 -1 0 1at 2982.915 kb on - strand, within Xcc-8004.3049.1at 2982.915 kb on - strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.944 kb on + strand, within Xcc-8004.3049.1at 2982.945 kb on - strand, within Xcc-8004.3049.1at 2982.945 kb on - strand, within Xcc-8004.3049.1at 2982.945 kb on - strand, within Xcc-8004.3049.1at 2982.945 kb on - strand, within Xcc-8004.3049.1at 2982.982 kb on - strand, within Xcc-8004.3049.1at 2982.982 kb on - strand, within Xcc-8004.3049.1at 2982.982 kb on - strand, within Xcc-8004.3049.1at 2983.145 kb on + strand, within Xcc-8004.3049.1at 2983.238 kb on + strand, within Xcc-8004.3049.1at 2983.238 kb on + strand, within Xcc-8004.3049.1at 2983.565 kb on + strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.566 kb on - strand, within Xcc-8004.3049.1at 2983.736 kb on + strand, within Xcc-8004.3049.1at 2983.736 kb on + strand, within Xcc-8004.3049.1at 2983.737 kb on - strand, within Xcc-8004.3049.1at 2983.737 kb on - strand, within Xcc-8004.3049.1at 2983.737 kb on - strand, within Xcc-8004.3049.1at 2983.760 kb on + strandat 2983.784 kb on + strandat 2983.785 kb on - strandat 2983.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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2,982,915 - Xcc-8004.3049.1 0.36 -2.6
2,982,915 - Xcc-8004.3049.1 0.36 -1.0
2,982,944 + Xcc-8004.3049.1 0.37 -2.3
2,982,944 + Xcc-8004.3049.1 0.37 -1.2
2,982,944 + Xcc-8004.3049.1 0.37 -0.3
2,982,944 + Xcc-8004.3049.1 0.37 -1.2
2,982,944 + Xcc-8004.3049.1 0.37 -0.7
2,982,944 + Xcc-8004.3049.1 0.37 -2.1
2,982,945 - Xcc-8004.3049.1 0.38 -2.6
2,982,945 - Xcc-8004.3049.1 0.38 -0.2
2,982,945 - Xcc-8004.3049.1 0.38 -2.6
2,982,945 - Xcc-8004.3049.1 0.38 -1.6
2,982,982 - Xcc-8004.3049.1 0.40 -0.3
2,982,982 - Xcc-8004.3049.1 0.40 +0.5
2,982,982 - Xcc-8004.3049.1 0.40 -1.0
2,983,145 + Xcc-8004.3049.1 0.51 -3.1
2,983,238 + Xcc-8004.3049.1 0.57 -0.8
2,983,238 + Xcc-8004.3049.1 0.57 -2.5
2,983,565 + Xcc-8004.3049.1 0.78 -2.1
2,983,566 - Xcc-8004.3049.1 0.79 -0.2
2,983,566 - Xcc-8004.3049.1 0.79 -1.6
2,983,566 - Xcc-8004.3049.1 0.79 -2.1
2,983,566 - Xcc-8004.3049.1 0.79 -3.5
2,983,566 - Xcc-8004.3049.1 0.79 -1.9
2,983,566 - Xcc-8004.3049.1 0.79 -2.9
2,983,736 + Xcc-8004.3049.1 0.90 -1.6
2,983,736 + Xcc-8004.3049.1 0.90 -1.8
2,983,737 - Xcc-8004.3049.1 0.90 -2.1
2,983,737 - Xcc-8004.3049.1 0.90 -1.1
2,983,737 - Xcc-8004.3049.1 0.90 -0.5
2,983,760 + +0.8
2,983,784 + -1.0
2,983,785 - -2.0
2,983,785 - -1.5

Or see this region's nucleotide sequence