Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2059.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2057.1 and Xcc-8004.2059.1 are separated by 211 nucleotidesXcc-8004.2059.1 and Xcc-8004.2060.1 overlap by 10 nucleotides Xcc-8004.2057.1: Xcc-8004.2057.1 - Maltodextrin glucosidase (EC 3.2.1.20), at 1,969,222 to 1,970,838 Xcc-8004.2057.1 Xcc-8004.2059.1: Xcc-8004.2059.1 - hypothetical protein, at 1,971,050 to 1,971,169 Xcc-8004.2059.1 Xcc-8004.2060.1: Xcc-8004.2060.1 - Mobile element protein, at 1,971,160 to 1,972,140 Xcc-8004.2060.1 Position (kb) 1971 1972Strain fitness (log2 ratio) -2 -1 0 1at 1970.069 kb on - strand, within Xcc-8004.2057.1at 1970.091 kb on + strand, within Xcc-8004.2057.1at 1970.092 kb on - strand, within Xcc-8004.2057.1at 1970.092 kb on - strand, within Xcc-8004.2057.1at 1970.098 kb on + strand, within Xcc-8004.2057.1at 1970.099 kb on - strand, within Xcc-8004.2057.1at 1970.125 kb on + strand, within Xcc-8004.2057.1at 1970.137 kb on + strand, within Xcc-8004.2057.1at 1970.137 kb on + strand, within Xcc-8004.2057.1at 1970.153 kb on + strand, within Xcc-8004.2057.1at 1970.153 kb on + strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.154 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.217 kb on - strand, within Xcc-8004.2057.1at 1970.315 kb on + strand, within Xcc-8004.2057.1at 1970.316 kb on - strand, within Xcc-8004.2057.1at 1970.317 kb on + strand, within Xcc-8004.2057.1at 1970.317 kb on + strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.318 kb on - strand, within Xcc-8004.2057.1at 1970.561 kb on + strand, within Xcc-8004.2057.1at 1970.623 kb on + strand, within Xcc-8004.2057.1at 1970.753 kb on + strandat 1970.753 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.792 kb on + strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.793 kb on - strandat 1970.841 kb on - strandat 1970.841 kb on - strandat 1970.875 kb on - strandat 1970.875 kb on - strandat 1971.095 kb on - strand, within Xcc-8004.2059.1at 1971.095 kb on - strand, within Xcc-8004.2059.1at 1971.124 kb on - strand, within Xcc-8004.2059.1at 1971.621 kb on + strand, within Xcc-8004.2060.1at 1971.621 kb on + strand, within Xcc-8004.2060.1at 1971.621 kb on + strand, within Xcc-8004.2060.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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1,970,069 - Xcc-8004.2057.1 0.52 -0.7
1,970,091 + Xcc-8004.2057.1 0.54 +0.4
1,970,092 - Xcc-8004.2057.1 0.54 +0.4
1,970,092 - Xcc-8004.2057.1 0.54 +0.4
1,970,098 + Xcc-8004.2057.1 0.54 +0.2
1,970,099 - Xcc-8004.2057.1 0.54 -2.2
1,970,125 + Xcc-8004.2057.1 0.56 -1.0
1,970,137 + Xcc-8004.2057.1 0.57 +0.1
1,970,137 + Xcc-8004.2057.1 0.57 +0.3
1,970,153 + Xcc-8004.2057.1 0.58 -0.7
1,970,153 + Xcc-8004.2057.1 0.58 +0.1
1,970,154 - Xcc-8004.2057.1 0.58 -0.1
1,970,154 - Xcc-8004.2057.1 0.58 +0.2
1,970,154 - Xcc-8004.2057.1 0.58 +0.2
1,970,154 - Xcc-8004.2057.1 0.58 -0.3
1,970,154 - Xcc-8004.2057.1 0.58 -0.2
1,970,154 - Xcc-8004.2057.1 0.58 -0.3
1,970,217 - Xcc-8004.2057.1 0.62 +0.4
1,970,217 - Xcc-8004.2057.1 0.62 +0.1
1,970,217 - Xcc-8004.2057.1 0.62 -1.1
1,970,315 + Xcc-8004.2057.1 0.68 -0.8
1,970,316 - Xcc-8004.2057.1 0.68 -0.0
1,970,317 + Xcc-8004.2057.1 0.68 +1.0
1,970,317 + Xcc-8004.2057.1 0.68 -0.6
1,970,318 - Xcc-8004.2057.1 0.68 +0.3
1,970,318 - Xcc-8004.2057.1 0.68 +0.5
1,970,318 - Xcc-8004.2057.1 0.68 +0.3
1,970,318 - Xcc-8004.2057.1 0.68 +0.7
1,970,561 + Xcc-8004.2057.1 0.83 +0.5
1,970,623 + Xcc-8004.2057.1 0.87 -0.5
1,970,753 + -0.0
1,970,753 + +0.4
1,970,792 + -0.5
1,970,792 + +0.4
1,970,792 + +1.2
1,970,792 + +0.1
1,970,793 - +0.3
1,970,793 - -0.6
1,970,793 - -0.6
1,970,793 - -0.7
1,970,793 - +0.1
1,970,841 - +1.6
1,970,841 - -0.2
1,970,875 - -0.7
1,970,875 - -1.9
1,971,095 - Xcc-8004.2059.1 0.38 +0.3
1,971,095 - Xcc-8004.2059.1 0.38 -1.8
1,971,124 - Xcc-8004.2059.1 0.62 -1.3
1,971,621 + Xcc-8004.2060.1 0.47 +1.1
1,971,621 + Xcc-8004.2060.1 0.47 +1.2
1,971,621 + Xcc-8004.2060.1 0.47 -0.4

Or see this region's nucleotide sequence