Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1651.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1650.1 and Xcc-8004.1651.1 are separated by 366 nucleotidesXcc-8004.1651.1 and Xcc-8004.1652.1 overlap by 1 nucleotides Xcc-8004.1650.1: Xcc-8004.1650.1 - amino acid transporter, at 1,587,951 to 1,589,543 Xcc-8004.1650.1 Xcc-8004.1651.1: Xcc-8004.1651.1 - putative Cytochrome bd2, subunit I, at 1,589,910 to 1,591,307 Xcc-8004.1651.1 Xcc-8004.1652.1: Xcc-8004.1652.1 - putative Cytochrome bd2, subunit II, at 1,591,307 to 1,592,323 Xcc-8004.1652.1 Position (kb) 1589 1590 1591 1592Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1588.929 kb on + strand, within Xcc-8004.1650.1at 1588.929 kb on + strand, within Xcc-8004.1650.1at 1588.929 kb on + strand, within Xcc-8004.1650.1at 1588.929 kb on + strand, within Xcc-8004.1650.1at 1588.929 kb on + strand, within Xcc-8004.1650.1at 1588.930 kb on - strand, within Xcc-8004.1650.1at 1588.930 kb on - strand, within Xcc-8004.1650.1at 1588.930 kb on - strand, within Xcc-8004.1650.1at 1588.930 kb on - strand, within Xcc-8004.1650.1at 1589.094 kb on + strand, within Xcc-8004.1650.1at 1589.095 kb on - strand, within Xcc-8004.1650.1at 1589.541 kb on + strandat 1589.548 kb on + strandat 1589.548 kb on + strandat 1589.581 kb on + strandat 1589.652 kb on - strandat 1590.061 kb on - strand, within Xcc-8004.1651.1at 1590.198 kb on + strand, within Xcc-8004.1651.1at 1590.198 kb on + strand, within Xcc-8004.1651.1at 1590.198 kb on + strand, within Xcc-8004.1651.1at 1590.199 kb on - strand, within Xcc-8004.1651.1at 1590.199 kb on - strand, within Xcc-8004.1651.1at 1590.199 kb on - strand, within Xcc-8004.1651.1at 1590.199 kb on - strand, within Xcc-8004.1651.1at 1590.516 kb on + strand, within Xcc-8004.1651.1at 1590.517 kb on - strand, within Xcc-8004.1651.1at 1590.517 kb on - strand, within Xcc-8004.1651.1at 1590.758 kb on - strand, within Xcc-8004.1651.1at 1591.063 kb on - strand, within Xcc-8004.1651.1at 1591.063 kb on - strand, within Xcc-8004.1651.1at 1591.071 kb on + strand, within Xcc-8004.1651.1at 1591.071 kb on + strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.072 kb on - strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.143 kb on + strand, within Xcc-8004.1651.1at 1591.144 kb on - strand, within Xcc-8004.1651.1at 1591.144 kb on - strand, within Xcc-8004.1651.1at 1591.186 kb on - strandat 1591.186 kb on - strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.370 kb on + strandat 1591.371 kb on - strandat 1591.371 kb on - strandat 1591.371 kb on - strandat 1591.539 kb on - strand, within Xcc-8004.1652.1at 1591.539 kb on - strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.562 kb on + strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.563 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.567 kb on - strand, within Xcc-8004.1652.1at 1591.657 kb on + strand, within Xcc-8004.1652.1at 1591.722 kb on + strand, within Xcc-8004.1652.1at 1591.751 kb on + strand, within Xcc-8004.1652.1at 1591.820 kb on + strand, within Xcc-8004.1652.1at 1591.821 kb on - strand, within Xcc-8004.1652.1at 1591.821 kb on - strand, within Xcc-8004.1652.1at 1591.891 kb on - strand, within Xcc-8004.1652.1at 1591.997 kb on + strand, within Xcc-8004.1652.1at 1591.998 kb on - strand, within Xcc-8004.1652.1at 1592.153 kb on + strand, within Xcc-8004.1652.1at 1592.171 kb on + strand, within Xcc-8004.1652.1at 1592.172 kb on - strand, within Xcc-8004.1652.1at 1592.259 kb on - strandat 1592.259 kb on - strandat 1592.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
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1,588,929 + Xcc-8004.1650.1 0.61 -0.3
1,588,929 + Xcc-8004.1650.1 0.61 +0.9
1,588,929 + Xcc-8004.1650.1 0.61 -0.0
1,588,929 + Xcc-8004.1650.1 0.61 +0.4
1,588,929 + Xcc-8004.1650.1 0.61 +1.5
1,588,930 - Xcc-8004.1650.1 0.61 -0.8
1,588,930 - Xcc-8004.1650.1 0.61 +0.6
1,588,930 - Xcc-8004.1650.1 0.61 -1.0
1,588,930 - Xcc-8004.1650.1 0.61 -0.4
1,589,094 + Xcc-8004.1650.1 0.72 +1.9
1,589,095 - Xcc-8004.1650.1 0.72 -0.7
1,589,541 + -0.1
1,589,548 + -1.1
1,589,548 + -0.8
1,589,581 + +0.2
1,589,652 - -1.4
1,590,061 - Xcc-8004.1651.1 0.11 -0.5
1,590,198 + Xcc-8004.1651.1 0.21 +1.2
1,590,198 + Xcc-8004.1651.1 0.21 -0.7
1,590,198 + Xcc-8004.1651.1 0.21 -0.2
1,590,199 - Xcc-8004.1651.1 0.21 -0.4
1,590,199 - Xcc-8004.1651.1 0.21 -0.8
1,590,199 - Xcc-8004.1651.1 0.21 -1.9
1,590,199 - Xcc-8004.1651.1 0.21 -2.6
1,590,516 + Xcc-8004.1651.1 0.43 -0.4
1,590,517 - Xcc-8004.1651.1 0.43 +0.7
1,590,517 - Xcc-8004.1651.1 0.43 -2.2
1,590,758 - Xcc-8004.1651.1 0.61 -0.9
1,591,063 - Xcc-8004.1651.1 0.82 -0.8
1,591,063 - Xcc-8004.1651.1 0.82 -1.9
1,591,071 + Xcc-8004.1651.1 0.83 -0.7
1,591,071 + Xcc-8004.1651.1 0.83 -0.6
1,591,072 - Xcc-8004.1651.1 0.83 -1.1
1,591,072 - Xcc-8004.1651.1 0.83 -1.5
1,591,072 - Xcc-8004.1651.1 0.83 +0.0
1,591,143 + Xcc-8004.1651.1 0.88 -1.7
1,591,143 + Xcc-8004.1651.1 0.88 -0.4
1,591,143 + Xcc-8004.1651.1 0.88 -0.4
1,591,143 + Xcc-8004.1651.1 0.88 -0.6
1,591,143 + Xcc-8004.1651.1 0.88 -1.1
1,591,143 + Xcc-8004.1651.1 0.88 +0.4
1,591,144 - Xcc-8004.1651.1 0.88 -0.7
1,591,144 - Xcc-8004.1651.1 0.88 -0.4
1,591,186 - -0.1
1,591,186 - -0.6
1,591,370 + -0.6
1,591,370 + -0.8
1,591,370 + +0.8
1,591,370 + -2.7
1,591,370 + +0.1
1,591,371 - -1.4
1,591,371 - -2.0
1,591,371 - -0.3
1,591,539 - Xcc-8004.1652.1 0.23 +0.2
1,591,539 - Xcc-8004.1652.1 0.23 +1.1
1,591,562 + Xcc-8004.1652.1 0.25 -1.9
1,591,562 + Xcc-8004.1652.1 0.25 +0.4
1,591,562 + Xcc-8004.1652.1 0.25 -1.3
1,591,563 - Xcc-8004.1652.1 0.25 +1.9
1,591,563 - Xcc-8004.1652.1 0.25 -2.4
1,591,563 - Xcc-8004.1652.1 0.25 -0.5
1,591,563 - Xcc-8004.1652.1 0.25 -0.8
1,591,567 - Xcc-8004.1652.1 0.26 +0.3
1,591,567 - Xcc-8004.1652.1 0.26 -0.9
1,591,567 - Xcc-8004.1652.1 0.26 -0.8
1,591,657 + Xcc-8004.1652.1 0.34 -3.5
1,591,722 + Xcc-8004.1652.1 0.41 +0.1
1,591,751 + Xcc-8004.1652.1 0.44 -1.7
1,591,820 + Xcc-8004.1652.1 0.50 -2.7
1,591,821 - Xcc-8004.1652.1 0.51 -0.2
1,591,821 - Xcc-8004.1652.1 0.51 -0.9
1,591,891 - Xcc-8004.1652.1 0.57 -0.3
1,591,997 + Xcc-8004.1652.1 0.68 -2.0
1,591,998 - Xcc-8004.1652.1 0.68 -0.8
1,592,153 + Xcc-8004.1652.1 0.83 +0.7
1,592,171 + Xcc-8004.1652.1 0.85 -0.1
1,592,172 - Xcc-8004.1652.1 0.85 +0.6
1,592,259 - -0.6
1,592,259 - -0.1
1,592,259 - -0.9

Or see this region's nucleotide sequence