Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1315.1 and Xcc-8004.1316.1 are separated by 103 nucleotides Xcc-8004.1316.1 and Xcc-8004.1317.1 are separated by 155 nucleotides
Xcc-8004.1315.1: Xcc-8004.1315.1 - FIG01212264: hypothetical protein, at 1,250,567 to 1,251,592
Xcc-8004.1315.1
Xcc-8004.1316.1: Xcc-8004.1316.1 - hypothetical protein, at 1,251,696 to 1,251,986
Xcc-8004.1316.1
Xcc-8004.1317.1: Xcc-8004.1317.1 - Ync, at 1,252,142 to 1,253,068
Xcc-8004.1317.1
Position (kb) 1251
1252 Strain fitness (log2 ratio) -2
-1
0
1 at 1250.782 kb on - strand, within Xcc-8004.1315.1 at 1250.782 kb on - strand, within Xcc-8004.1315.1 at 1250.810 kb on - strand, within Xcc-8004.1315.1 at 1250.838 kb on - strand, within Xcc-8004.1315.1 at 1250.865 kb on + strand, within Xcc-8004.1315.1 at 1250.988 kb on + strand, within Xcc-8004.1315.1 at 1251.075 kb on - strand, within Xcc-8004.1315.1 at 1251.226 kb on - strand, within Xcc-8004.1315.1 at 1251.415 kb on - strand, within Xcc-8004.1315.1 at 1251.421 kb on + strand, within Xcc-8004.1315.1 at 1251.472 kb on + strand, within Xcc-8004.1315.1 at 1251.484 kb on - strand, within Xcc-8004.1315.1 at 1251.509 kb on + strand at 1251.577 kb on + strand at 1251.578 kb on - strand at 1251.578 kb on - strand at 1251.584 kb on - strand at 1251.600 kb on - strand at 1251.600 kb on - strand at 1251.610 kb on + strand at 1251.610 kb on + strand at 1251.611 kb on - strand at 1251.611 kb on - strand at 1251.611 kb on - strand at 1251.633 kb on + strand at 1251.634 kb on - strand at 1251.683 kb on + strand at 1251.684 kb on - strand at 1251.741 kb on - strand, within Xcc-8004.1316.1 at 1251.741 kb on - strand, within Xcc-8004.1316.1 at 1251.914 kb on - strand, within Xcc-8004.1316.1 at 1251.924 kb on - strand, within Xcc-8004.1316.1 at 1252.041 kb on + strand at 1252.041 kb on + strand at 1252.066 kb on + strand at 1252.156 kb on + strand at 1252.157 kb on - strand at 1252.157 kb on - strand at 1252.226 kb on + strand at 1252.226 kb on + strand at 1252.226 kb on + strand at 1252.227 kb on - strand at 1252.270 kb on - strand, within Xcc-8004.1317.1 at 1252.273 kb on + strand, within Xcc-8004.1317.1 at 1252.273 kb on + strand, within Xcc-8004.1317.1 at 1252.273 kb on + strand, within Xcc-8004.1317.1 at 1252.273 kb on + strand, within Xcc-8004.1317.1 at 1252.273 kb on + strand, within Xcc-8004.1317.1 at 1252.274 kb on - strand, within Xcc-8004.1317.1 at 1252.274 kb on - strand, within Xcc-8004.1317.1 at 1252.274 kb on - strand, within Xcc-8004.1317.1 at 1252.274 kb on - strand, within Xcc-8004.1317.1 at 1252.510 kb on - strand, within Xcc-8004.1317.1 at 1252.510 kb on - strand, within Xcc-8004.1317.1 at 1252.557 kb on + strand, within Xcc-8004.1317.1 at 1252.557 kb on + strand, within Xcc-8004.1317.1 at 1252.558 kb on - strand, within Xcc-8004.1317.1 at 1252.610 kb on + strand, within Xcc-8004.1317.1 at 1252.754 kb on + strand, within Xcc-8004.1317.1 at 1252.755 kb on - strand, within Xcc-8004.1317.1 at 1252.812 kb on - strand, within Xcc-8004.1317.1 at 1252.917 kb on + strand, within Xcc-8004.1317.1 at 1252.917 kb on + strand, within Xcc-8004.1317.1 at 1252.918 kb on - strand, within Xcc-8004.1317.1 at 1252.918 kb on - strand, within Xcc-8004.1317.1 at 1252.951 kb on + strand, within Xcc-8004.1317.1 at 1252.951 kb on + strand, within Xcc-8004.1317.1 at 1252.952 kb on - strand, within Xcc-8004.1317.1
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days remove 1,250,782 - Xcc-8004.1315.1 0.21 -0.3 1,250,782 - Xcc-8004.1315.1 0.21 +1.2 1,250,810 - Xcc-8004.1315.1 0.24 -0.6 1,250,838 - Xcc-8004.1315.1 0.26 -2.0 1,250,865 + Xcc-8004.1315.1 0.29 -1.6 1,250,988 + Xcc-8004.1315.1 0.41 -0.4 1,251,075 - Xcc-8004.1315.1 0.50 +1.3 1,251,226 - Xcc-8004.1315.1 0.64 -1.1 1,251,415 - Xcc-8004.1315.1 0.83 -0.4 1,251,421 + Xcc-8004.1315.1 0.83 +0.4 1,251,472 + Xcc-8004.1315.1 0.88 -0.7 1,251,484 - Xcc-8004.1315.1 0.89 -2.5 1,251,509 + -1.4 1,251,577 + -0.2 1,251,578 - -0.0 1,251,578 - +0.3 1,251,584 - -1.5 1,251,600 - +0.3 1,251,600 - -0.3 1,251,610 + +0.8 1,251,610 + -2.3 1,251,611 - +0.3 1,251,611 - +1.7 1,251,611 - +0.4 1,251,633 + +0.4 1,251,634 - +0.6 1,251,683 + -0.6 1,251,684 - -0.2 1,251,741 - Xcc-8004.1316.1 0.15 -0.6 1,251,741 - Xcc-8004.1316.1 0.15 -1.3 1,251,914 - Xcc-8004.1316.1 0.75 -1.2 1,251,924 - Xcc-8004.1316.1 0.78 +1.5 1,252,041 + -0.3 1,252,041 + +0.3 1,252,066 + -0.5 1,252,156 + +0.1 1,252,157 - +0.2 1,252,157 - +0.4 1,252,226 + -1.8 1,252,226 + +0.2 1,252,226 + +1.1 1,252,227 - +1.1 1,252,270 - Xcc-8004.1317.1 0.14 -0.2 1,252,273 + Xcc-8004.1317.1 0.14 -0.1 1,252,273 + Xcc-8004.1317.1 0.14 +0.1 1,252,273 + Xcc-8004.1317.1 0.14 +0.1 1,252,273 + Xcc-8004.1317.1 0.14 -0.0 1,252,273 + Xcc-8004.1317.1 0.14 -0.9 1,252,274 - Xcc-8004.1317.1 0.14 -2.1 1,252,274 - Xcc-8004.1317.1 0.14 -0.4 1,252,274 - Xcc-8004.1317.1 0.14 -0.3 1,252,274 - Xcc-8004.1317.1 0.14 -1.1 1,252,510 - Xcc-8004.1317.1 0.40 +0.1 1,252,510 - Xcc-8004.1317.1 0.40 -0.4 1,252,557 + Xcc-8004.1317.1 0.45 +0.6 1,252,557 + Xcc-8004.1317.1 0.45 +0.1 1,252,558 - Xcc-8004.1317.1 0.45 +0.2 1,252,610 + Xcc-8004.1317.1 0.50 -0.4 1,252,754 + Xcc-8004.1317.1 0.66 -0.6 1,252,755 - Xcc-8004.1317.1 0.66 +0.1 1,252,812 - Xcc-8004.1317.1 0.72 -1.3 1,252,917 + Xcc-8004.1317.1 0.84 -1.9 1,252,917 + Xcc-8004.1317.1 0.84 +0.6 1,252,918 - Xcc-8004.1317.1 0.84 -1.0 1,252,918 - Xcc-8004.1317.1 0.84 +0.9 1,252,951 + Xcc-8004.1317.1 0.87 +1.4 1,252,951 + Xcc-8004.1317.1 0.87 -0.7 1,252,952 - Xcc-8004.1317.1 0.87 +0.5
Or see this region's nucleotide sequence