Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1244.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
1,174,206	+		Xcc-8004.1243.1	0.66	+0.1
1,174,206	+		Xcc-8004.1243.1	0.66	-0.4
1,174,407	+		Xcc-8004.1243.1	0.80	-0.1
1,174,408	-		Xcc-8004.1243.1	0.80	-0.3
1,174,408	-		Xcc-8004.1243.1	0.80	+0.1
1,174,408	-		Xcc-8004.1243.1	0.80	-2.8
1,174,430	+		Xcc-8004.1243.1	0.81	+1.9
1,174,431	-		Xcc-8004.1243.1	0.81	-1.2
1,174,431	-		Xcc-8004.1243.1	0.81	+1.0
1,174,440	+		Xcc-8004.1243.1	0.82	+0.7
1,174,440	+		Xcc-8004.1243.1	0.82	+0.4
1,174,440	+		Xcc-8004.1243.1	0.82	-0.2
1,174,440	+		Xcc-8004.1243.1	0.82	-0.9
1,174,441	-		Xcc-8004.1243.1	0.82	-1.3
1,174,441	-		Xcc-8004.1243.1	0.82	-0.9
1,174,441	-		Xcc-8004.1243.1	0.82	-0.7
1,174,441	-		Xcc-8004.1243.1	0.82	+2.2
1,174,441	-		Xcc-8004.1243.1	0.82	+0.6
1,174,441	-		Xcc-8004.1243.1	0.82	-0.6
1,174,441	-		Xcc-8004.1243.1	0.82	+1.3
1,174,441	-		Xcc-8004.1243.1	0.82	+1.2
1,174,704	+				+1.0
1,174,704	+				-0.4
1,174,704	+				+0.8
1,174,704	+				+0.4
1,174,705	-				-0.6
1,174,721	+				+0.4
1,174,721	+				-1.1
1,174,721	+				-1.1
1,174,722	-				-0.2
1,174,722	-				+0.2
1,174,851	+				+1.5
1,174,851	+				-0.1
1,174,851	+				-0.3
1,174,851	+				+0.3
1,174,851	+				+0.5
1,174,851	+				-1.0
1,174,851	+				+0.2
1,174,851	+				+1.2
1,174,851	+				+0.9
1,174,851	+				-0.1
1,174,851	+				-0.2
1,174,852	-				+1.0
1,174,852	-				+0.9
1,174,852	-				-0.2
1,174,852	-				+0.1
1,174,852	-				-0.4
1,174,852	-				+0.1
1,174,852	-				-3.3
1,174,954	+				-1.0
1,174,954	+				+1.3
1,174,955	-				+0.5
1,174,957	+				-0.2
1,175,084	+				+1.5
1,175,085	-				-2.0
1,175,117	+				-0.3
1,175,117	+				+0.2
1,175,118	-				-2.9
1,175,132	+				-0.5
1,175,134	+				+0.2
1,175,134	+				+0.1
1,175,134	+				-1.4
1,175,134	+				+0.6
1,175,134	+				+0.0
1,175,168	+				+0.7
1,175,168	+				+1.2
1,175,168	+				-0.9
1,175,168	+				+0.8
1,175,168	+				-0.6
1,175,168	+				-1.2
1,175,168	+				-0.1
1,175,169	-				+2.1
1,175,169	-				-1.0
1,175,169	-				-0.1
1,175,169	-				+0.6
1,175,169	-				+0.4
1,175,169	-				-1.1
1,175,169	-				-1.9
1,175,169	-				+0.2
1,175,169	-				+0.4
1,175,354	+		Xcc-8004.1244.1	0.18	-1.6
1,175,354	+		Xcc-8004.1244.1	0.18	-0.6
1,175,354	+		Xcc-8004.1244.1	0.18	+0.6
1,175,355	-		Xcc-8004.1244.1	0.18	-1.6
1,175,355	-		Xcc-8004.1244.1	0.18	+0.7
1,175,355	-		Xcc-8004.1244.1	0.18	-1.0
1,175,355	-		Xcc-8004.1244.1	0.18	-0.4
1,175,355	-		Xcc-8004.1244.1	0.18	+0.9
1,175,426	+		Xcc-8004.1244.1	0.25	-0.1
1,175,426	+		Xcc-8004.1244.1	0.25	-0.9
1,175,426	+		Xcc-8004.1244.1	0.25	+1.1
1,175,427	-		Xcc-8004.1244.1	0.25	+0.4
1,175,427	-		Xcc-8004.1244.1	0.25	+0.6
1,175,427	-		Xcc-8004.1244.1	0.25	-0.5
1,175,427	-		Xcc-8004.1244.1	0.25	-1.3
1,175,427	-		Xcc-8004.1244.1	0.25	-0.6
1,175,427	-		Xcc-8004.1244.1	0.25	-1.7
1,175,427	-		Xcc-8004.1244.1	0.25	+0.0
1,175,549	+		Xcc-8004.1244.1	0.38	+1.9
1,175,549	+		Xcc-8004.1244.1	0.38	-0.1
1,175,549	+		Xcc-8004.1244.1	0.38	+0.3
1,175,549	+		Xcc-8004.1244.1	0.38	-0.6
1,175,549	+		Xcc-8004.1244.1	0.38	-0.7
1,175,549	+		Xcc-8004.1244.1	0.38	+0.2
1,175,550	-		Xcc-8004.1244.1	0.38	-0.5
1,175,550	-		Xcc-8004.1244.1	0.38	-0.1
1,175,550	-		Xcc-8004.1244.1	0.38	+0.3
1,175,550	-		Xcc-8004.1244.1	0.38	-1.1
1,175,552	+		Xcc-8004.1244.1	0.38	+0.3
1,175,552	+		Xcc-8004.1244.1	0.38	+0.3
1,175,552	+		Xcc-8004.1244.1	0.38	-1.0
1,175,552	+		Xcc-8004.1244.1	0.38	-1.5
1,175,552	+		Xcc-8004.1244.1	0.38	-0.6
1,175,552	+		Xcc-8004.1244.1	0.38	+1.0
1,175,553	-		Xcc-8004.1244.1	0.38	-0.8
1,175,553	-		Xcc-8004.1244.1	0.38	-1.8
1,175,553	-		Xcc-8004.1244.1	0.38	-1.9
1,175,553	-		Xcc-8004.1244.1	0.38	-0.3
1,175,553	-		Xcc-8004.1244.1	0.38	-2.6
1,175,553	-		Xcc-8004.1244.1	0.38	-1.1
1,175,553	-		Xcc-8004.1244.1	0.38	-1.0
1,175,553	-		Xcc-8004.1244.1	0.38	-0.8
1,175,553	-		Xcc-8004.1244.1	0.38	-2.1
1,175,658	-		Xcc-8004.1244.1	0.48	-0.6
1,175,745	-		Xcc-8004.1244.1	0.57	-1.2
1,175,789	+		Xcc-8004.1244.1	0.61	+0.2
1,175,789	+		Xcc-8004.1244.1	0.61	-2.1
1,175,789	+		Xcc-8004.1244.1	0.61	-1.4
1,175,789	+		Xcc-8004.1244.1	0.61	-0.9
1,175,790	-		Xcc-8004.1244.1	0.62	-1.2
1,175,790	-		Xcc-8004.1244.1	0.62	-0.8
1,176,099	-				+0.0
1,176,099	-				-1.7
1,176,122	+				-1.8
1,176,123	-				-1.6
1,176,201	+				+1.0
1,176,201	+				-0.1
1,176,201	+				+0.9
1,176,201	+				+0.1
1,176,201	+				-1.3
1,176,201	+				+0.0
1,176,202	-				-0.7
1,176,202	-				-0.7
1,176,202	-				-1.2
1,176,350	-				-0.4
1,176,387	+				+0.2
1,176,387	+				-0.9
1,176,387	+				-0.7
1,176,387	+				-0.4
1,176,387	+				-1.6
1,176,388	-				-0.5
1,176,388	-				-1.6
1,176,398	+				-0.3
1,176,398	+				-0.0
1,176,398	+				-0.4
1,176,398	+				-1.5
1,176,398	+				+0.8
1,176,399	-				-2.6
1,176,399	-				+0.6
1,176,399	-				+0.7
1,176,399	-				-0.6
1,176,469	+				-0.3
1,176,470	-				-1.1
1,176,652	+				-2.6
1,176,652	+				-0.5
1,176,652	+				-1.1
1,176,653	-				-0.2
1,176,661	+				-0.2
1,176,661	+				+2.9
1,176,661	+				+0.1
1,176,661	+				+0.0
1,176,662	-				+0.1
1,176,662	-				-0.2
1,176,675	-		Xcc-8004.1245.1	0.12	-0.1
1,176,676	+		Xcc-8004.1245.1	0.12	-0.0
1,176,676	+		Xcc-8004.1245.1	0.12	-0.5
1,176,676	+		Xcc-8004.1245.1	0.12	+0.5
1,176,676	+		Xcc-8004.1245.1	0.12	+0.5
1,176,761	-		Xcc-8004.1245.1	0.28	-0.1
1,176,761	-		Xcc-8004.1245.1	0.28	+1.5
1,176,775	+		Xcc-8004.1245.1	0.30	+0.3
1,176,775	+		Xcc-8004.1245.1	0.30	+1.6
1,176,775	+		Xcc-8004.1245.1	0.30	-0.5
1,176,775	+		Xcc-8004.1245.1	0.30	-0.1
1,176,775	+		Xcc-8004.1245.1	0.30	+0.5
1,176,775	+		Xcc-8004.1245.1	0.30	+1.0
1,176,776	-		Xcc-8004.1245.1	0.30	-2.0
1,176,776	-		Xcc-8004.1245.1	0.30	+0.6
1,176,776	-		Xcc-8004.1245.1	0.30	+0.8
1,176,776	-		Xcc-8004.1245.1	0.30	+0.0
1,176,776	-		Xcc-8004.1245.1	0.30	+0.3
1,176,776	-		Xcc-8004.1245.1	0.30	+0.2
1,176,776	-		Xcc-8004.1245.1	0.30	+0.0
1,176,779	+		Xcc-8004.1245.1	0.31	-0.8
1,176,779	+		Xcc-8004.1245.1	0.31	-0.6
1,176,780	-		Xcc-8004.1245.1	0.31	-0.7
1,176,850	+		Xcc-8004.1245.1	0.44	+1.1
1,176,851	-		Xcc-8004.1245.1	0.44	+1.4
1,177,121	+				+1.5
1,177,151	+				-0.2
1,177,152	-				-0.8
1,177,152	-				+0.1
1,177,159	+				-1.1
1,177,159	+				+1.0
1,177,160	-				+0.3
1,177,160	-				-0.3
1,177,160	-				-0.7
1,177,163	+				+0.3
1,177,163	+				+1.3
1,177,163	+				+0.5
1,177,164	-				-1.4