Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1014.1

Experiment: Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1013.1 and Xcc-8004.1014.1 overlap by 1 nucleotidesXcc-8004.1014.1 and Xcc-8004.1015.1 are separated by 102 nucleotides Xcc-8004.1013.1: Xcc-8004.1013.1 - Probable GTPase related to EngC, at 957,091 to 958,182 Xcc-8004.1013.1 Xcc-8004.1014.1: Xcc-8004.1014.1 - FIG01210031: hypothetical protein, at 958,182 to 959,444 Xcc-8004.1014.1 Xcc-8004.1015.1: Xcc-8004.1015.1 - ThiJ/PfpI family protein, at 959,547 to 960,227 Xcc-8004.1015.1 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 958.440 kb on + strand, within Xcc-8004.1014.1at 958.460 kb on + strand, within Xcc-8004.1014.1at 958.461 kb on - strand, within Xcc-8004.1014.1at 958.518 kb on + strand, within Xcc-8004.1014.1at 959.198 kb on + strand, within Xcc-8004.1014.1at 959.199 kb on - strand, within Xcc-8004.1014.1at 959.199 kb on - strand, within Xcc-8004.1014.1at 959.314 kb on + strand, within Xcc-8004.1014.1at 959.315 kb on - strand, within Xcc-8004.1014.1at 959.315 kb on - strand, within Xcc-8004.1014.1at 959.389 kb on + strandat 959.472 kb on - strandat 959.472 kb on - strandat 959.638 kb on - strand, within Xcc-8004.1015.1at 959.638 kb on - strand, within Xcc-8004.1015.1at 959.640 kb on + strand, within Xcc-8004.1015.1at 959.640 kb on + strand, within Xcc-8004.1015.1at 959.640 kb on + strand, within Xcc-8004.1015.1at 959.641 kb on - strand, within Xcc-8004.1015.1at 959.792 kb on + strand, within Xcc-8004.1015.1at 959.793 kb on - strand, within Xcc-8004.1015.1at 960.109 kb on - strand, within Xcc-8004.1015.1at 960.353 kb on - strandat 960.364 kb on - strandat 960.364 kb on - strandat 960.405 kb on + strandat 960.406 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days
remove
958,440 + Xcc-8004.1014.1 0.20 -0.6
958,460 + Xcc-8004.1014.1 0.22 -0.3
958,461 - Xcc-8004.1014.1 0.22 +0.1
958,518 + Xcc-8004.1014.1 0.27 -1.3
959,198 + Xcc-8004.1014.1 0.80 -0.3
959,199 - Xcc-8004.1014.1 0.81 -0.8
959,199 - Xcc-8004.1014.1 0.81 -2.0
959,314 + Xcc-8004.1014.1 0.90 -0.3
959,315 - Xcc-8004.1014.1 0.90 -1.1
959,315 - Xcc-8004.1014.1 0.90 -1.3
959,389 + -1.2
959,472 - +0.2
959,472 - +0.4
959,638 - Xcc-8004.1015.1 0.13 +0.3
959,638 - Xcc-8004.1015.1 0.13 +0.0
959,640 + Xcc-8004.1015.1 0.14 -0.1
959,640 + Xcc-8004.1015.1 0.14 +0.2
959,640 + Xcc-8004.1015.1 0.14 -0.5
959,641 - Xcc-8004.1015.1 0.14 +1.9
959,792 + Xcc-8004.1015.1 0.36 -0.7
959,793 - Xcc-8004.1015.1 0.36 -0.4
960,109 - Xcc-8004.1015.1 0.83 -0.7
960,353 - -0.4
960,364 - -0.3
960,364 - -0.1
960,405 + +0.7
960,406 - -1.0

Or see this region's nucleotide sequence