Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20500

Experiment: Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20495 and BWI76_RS20500 are separated by 379 nucleotidesBWI76_RS20500 and BWI76_RS20505 are separated by 11 nucleotidesBWI76_RS20505 and BWI76_RS20510 are separated by 45 nucleotides BWI76_RS20495: BWI76_RS20495 - alanine transaminase, at 4,290,961 to 4,292,199 _RS20495 BWI76_RS20500: BWI76_RS20500 - signal transduction histidine kinase LytS, at 4,292,579 to 4,294,276 _RS20500 BWI76_RS20505: BWI76_RS20505 - DNA-binding response regulator, at 4,294,288 to 4,295,031 _RS20505 BWI76_RS20510: BWI76_RS20510 - glucokinase, at 4,295,077 to 4,296,042 _RS20510 Position (kb) 4292 4293 4294 4295Strain fitness (log2 ratio) -2 -1 0 1 2at 4291.640 kb on - strand, within BWI76_RS20495at 4291.653 kb on + strand, within BWI76_RS20495at 4291.762 kb on + strand, within BWI76_RS20495at 4291.829 kb on - strand, within BWI76_RS20495at 4291.832 kb on - strand, within BWI76_RS20495at 4291.863 kb on - strand, within BWI76_RS20495at 4291.864 kb on + strand, within BWI76_RS20495at 4292.021 kb on + strand, within BWI76_RS20495at 4292.071 kb on - strand, within BWI76_RS20495at 4292.222 kb on + strandat 4292.224 kb on - strandat 4292.230 kb on - strandat 4292.367 kb on - strandat 4292.571 kb on + strandat 4292.738 kb on + strandat 4292.738 kb on + strandat 4292.749 kb on + strand, within BWI76_RS20500at 4292.749 kb on + strand, within BWI76_RS20500at 4292.749 kb on + strand, within BWI76_RS20500at 4292.757 kb on - strand, within BWI76_RS20500at 4292.768 kb on - strand, within BWI76_RS20500at 4292.972 kb on - strand, within BWI76_RS20500at 4293.338 kb on + strand, within BWI76_RS20500at 4293.345 kb on - strand, within BWI76_RS20500at 4293.563 kb on - strand, within BWI76_RS20500at 4293.607 kb on + strand, within BWI76_RS20500at 4293.607 kb on + strand, within BWI76_RS20500at 4293.607 kb on + strand, within BWI76_RS20500at 4293.614 kb on - strand, within BWI76_RS20500at 4293.615 kb on - strand, within BWI76_RS20500at 4293.615 kb on - strand, within BWI76_RS20500at 4293.619 kb on - strand, within BWI76_RS20500at 4293.621 kb on + strandat 4293.621 kb on + strandat 4293.621 kb on + strand, within BWI76_RS20500at 4293.621 kb on + strand, within BWI76_RS20500at 4293.639 kb on - strand, within BWI76_RS20500at 4293.639 kb on - strand, within BWI76_RS20500at 4293.651 kb on + strand, within BWI76_RS20500at 4293.661 kb on - strand, within BWI76_RS20500at 4293.681 kb on - strand, within BWI76_RS20500at 4293.681 kb on - strand, within BWI76_RS20500at 4293.722 kb on - strand, within BWI76_RS20500at 4293.788 kb on - strand, within BWI76_RS20500at 4293.838 kb on + strand, within BWI76_RS20500at 4293.882 kb on + strand, within BWI76_RS20500at 4293.890 kb on - strand, within BWI76_RS20500at 4293.890 kb on - strand, within BWI76_RS20500at 4293.981 kb on + strand, within BWI76_RS20500at 4294.020 kb on + strand, within BWI76_RS20500at 4294.020 kb on + strand, within BWI76_RS20500at 4294.020 kb on + strand, within BWI76_RS20500at 4294.020 kb on + strand, within BWI76_RS20500at 4294.020 kb on + strand, within BWI76_RS20500at 4294.028 kb on - strand, within BWI76_RS20500at 4294.028 kb on - strand, within BWI76_RS20500at 4294.028 kb on - strand, within BWI76_RS20500at 4294.073 kb on + strand, within BWI76_RS20500at 4294.073 kb on + strandat 4294.081 kb on - strand, within BWI76_RS20500at 4294.082 kb on - strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.098 kb on + strand, within BWI76_RS20500at 4294.099 kb on + strand, within BWI76_RS20500at 4294.106 kb on - strand, within BWI76_RS20500at 4294.156 kb on + strandat 4294.160 kb on + strandat 4294.176 kb on - strandat 4294.181 kb on - strandat 4294.188 kb on + strandat 4294.242 kb on + strandat 4294.252 kb on - strandat 4294.254 kb on + strandat 4294.261 kb on - strandat 4294.391 kb on + strand, within BWI76_RS20505at 4294.401 kb on + strand, within BWI76_RS20505at 4294.469 kb on + strand, within BWI76_RS20505at 4294.504 kb on + strand, within BWI76_RS20505at 4294.549 kb on + strand, within BWI76_RS20505at 4294.557 kb on - strand, within BWI76_RS20505at 4294.557 kb on - strand, within BWI76_RS20505at 4294.584 kb on + strand, within BWI76_RS20505at 4294.591 kb on - strand, within BWI76_RS20505at 4294.592 kb on - strand, within BWI76_RS20505at 4294.593 kb on - strand, within BWI76_RS20505at 4294.637 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.659 kb on + strand, within BWI76_RS20505at 4294.667 kb on - strand, within BWI76_RS20505at 4294.684 kb on - strand, within BWI76_RS20505at 4294.727 kb on - strand, within BWI76_RS20505at 4294.727 kb on - strand, within BWI76_RS20505at 4294.895 kb on + strand, within BWI76_RS20505at 4294.951 kb on - strand, within BWI76_RS20505at 4294.951 kb on - strand, within BWI76_RS20505at 4295.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM
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4,291,640 - BWI76_RS20495 0.55 -0.2
4,291,653 + BWI76_RS20495 0.56 -1.5
4,291,762 + BWI76_RS20495 0.65 -0.5
4,291,829 - BWI76_RS20495 0.70 -0.3
4,291,832 - BWI76_RS20495 0.70 -0.1
4,291,863 - BWI76_RS20495 0.73 -0.6
4,291,864 + BWI76_RS20495 0.73 -0.6
4,292,021 + BWI76_RS20495 0.86 -0.1
4,292,071 - BWI76_RS20495 0.90 -0.6
4,292,222 + -1.4
4,292,224 - +0.5
4,292,230 - +1.3
4,292,367 - -0.5
4,292,571 + +0.1
4,292,738 + -2.1
4,292,738 + +0.7
4,292,749 + BWI76_RS20500 0.10 +0.3
4,292,749 + BWI76_RS20500 0.10 +0.4
4,292,749 + BWI76_RS20500 0.10 -0.2
4,292,757 - BWI76_RS20500 0.10 -0.8
4,292,768 - BWI76_RS20500 0.11 +0.6
4,292,972 - BWI76_RS20500 0.23 -0.2
4,293,338 + BWI76_RS20500 0.45 -0.4
4,293,345 - BWI76_RS20500 0.45 +0.3
4,293,563 - BWI76_RS20500 0.58 -0.0
4,293,607 + BWI76_RS20500 0.61 -1.3
4,293,607 + BWI76_RS20500 0.61 +0.8
4,293,607 + BWI76_RS20500 0.61 -0.1
4,293,614 - BWI76_RS20500 0.61 +0.2
4,293,615 - BWI76_RS20500 0.61 -0.1
4,293,615 - BWI76_RS20500 0.61 +1.2
4,293,619 - BWI76_RS20500 0.61 -0.6
4,293,621 + +1.0
4,293,621 + +0.5
4,293,621 + BWI76_RS20500 0.61 +1.2
4,293,621 + BWI76_RS20500 0.61 -0.3
4,293,639 - BWI76_RS20500 0.62 -0.3
4,293,639 - BWI76_RS20500 0.62 -0.0
4,293,651 + BWI76_RS20500 0.63 +1.4
4,293,661 - BWI76_RS20500 0.64 -0.1
4,293,681 - BWI76_RS20500 0.65 -0.3
4,293,681 - BWI76_RS20500 0.65 -0.2
4,293,722 - BWI76_RS20500 0.67 +0.4
4,293,788 - BWI76_RS20500 0.71 -0.1
4,293,838 + BWI76_RS20500 0.74 +0.7
4,293,882 + BWI76_RS20500 0.77 -0.2
4,293,890 - BWI76_RS20500 0.77 -0.3
4,293,890 - BWI76_RS20500 0.77 +0.3
4,293,981 + BWI76_RS20500 0.83 -0.3
4,294,020 + BWI76_RS20500 0.85 +1.0
4,294,020 + BWI76_RS20500 0.85 +0.3
4,294,020 + BWI76_RS20500 0.85 +0.2
4,294,020 + BWI76_RS20500 0.85 +0.2
4,294,020 + BWI76_RS20500 0.85 -0.2
4,294,028 - BWI76_RS20500 0.85 +0.3
4,294,028 - BWI76_RS20500 0.85 +0.1
4,294,028 - BWI76_RS20500 0.85 -0.1
4,294,073 + BWI76_RS20500 0.88 +0.0
4,294,073 + +2.4
4,294,081 - BWI76_RS20500 0.88 -0.4
4,294,082 - BWI76_RS20500 0.89 -0.2
4,294,098 + BWI76_RS20500 0.89 +1.2
4,294,098 + BWI76_RS20500 0.89 -0.2
4,294,098 + BWI76_RS20500 0.89 +0.2
4,294,099 + BWI76_RS20500 0.90 +0.9
4,294,106 - BWI76_RS20500 0.90 -0.7
4,294,156 + +0.2
4,294,160 + +1.1
4,294,176 - +0.3
4,294,181 - -0.8
4,294,188 + -0.8
4,294,242 + +0.2
4,294,252 - +0.1
4,294,254 + -0.2
4,294,261 - +0.3
4,294,391 + BWI76_RS20505 0.14 -0.6
4,294,401 + BWI76_RS20505 0.15 +0.2
4,294,469 + BWI76_RS20505 0.24 -0.2
4,294,504 + BWI76_RS20505 0.29 -0.0
4,294,549 + BWI76_RS20505 0.35 -0.4
4,294,557 - BWI76_RS20505 0.36 +0.7
4,294,557 - BWI76_RS20505 0.36 +0.5
4,294,584 + BWI76_RS20505 0.40 -0.0
4,294,591 - BWI76_RS20505 0.41 -0.1
4,294,592 - BWI76_RS20505 0.41 +0.5
4,294,593 - BWI76_RS20505 0.41 +0.3
4,294,637 + BWI76_RS20505 0.47 +0.7
4,294,659 + BWI76_RS20505 0.50 +0.2
4,294,659 + BWI76_RS20505 0.50 -0.3
4,294,659 + BWI76_RS20505 0.50 -0.3
4,294,659 + BWI76_RS20505 0.50 +0.2
4,294,667 - BWI76_RS20505 0.51 +0.0
4,294,684 - BWI76_RS20505 0.53 -0.9
4,294,727 - BWI76_RS20505 0.59 -1.0
4,294,727 - BWI76_RS20505 0.59 -0.1
4,294,895 + BWI76_RS20505 0.82 +0.0
4,294,951 - BWI76_RS20505 0.89 -0.1
4,294,951 - BWI76_RS20505 0.89 -0.9
4,295,006 - +0.5

Or see this region's nucleotide sequence