Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ald and DVU0572 are separated by 406 nucleotides DVU0572 and creA are separated by 492 nucleotides creA and DORF28911 are separated by 70 nucleotides
DVU0571: ald - alanine dehydrogenase (TIGR), at 636,374 to 637,486
ald
DVU0572: DVU0572 - hypothetical protein (TIGR), at 637,893 to 638,231
DVU0572
DVU0573: creA - creA protein (TIGR), at 638,724 to 639,149
creA
DORF28911: DORF28911 - SEED: FIG00602256: hypothetical protein, at 639,220 to 639,978
DORF28911
Position (kb) 637
638
639 Strain fitness (log2 ratio) -1
0
1 at 636.952 kb on + strand, within ald at 637.143 kb on - strand, within ald at 637.143 kb on - strand, within ald at 637.163 kb on - strand, within ald at 637.253 kb on + strand, within ald at 637.261 kb on - strand, within ald at 637.288 kb on + strand, within ald at 637.289 kb on + strand, within ald at 637.295 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.310 kb on - strand, within ald at 637.310 kb on - strand, within ald at 637.312 kb on + strand, within ald at 637.320 kb on - strand, within ald at 637.327 kb on + strand, within ald at 637.327 kb on + strand, within ald at 637.335 kb on - strand, within ald at 637.355 kb on + strand, within ald at 637.480 kb on + strand at 637.504 kb on - strand at 637.588 kb on - strand at 637.614 kb on + strand at 637.641 kb on - strand at 637.939 kb on + strand, within DVU0572 at 637.939 kb on + strand, within DVU0572 at 637.944 kb on + strand, within DVU0572 at 637.973 kb on - strand, within DVU0572 at 638.099 kb on - strand, within DVU0572 at 638.156 kb on + strand, within DVU0572 at 638.164 kb on - strand, within DVU0572 at 638.178 kb on + strand, within DVU0572 at 638.180 kb on + strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.207 kb on - strand at 638.247 kb on + strand at 638.275 kb on - strand at 638.282 kb on - strand at 638.309 kb on + strand at 638.316 kb on + strand at 638.324 kb on - strand at 638.335 kb on + strand at 638.471 kb on + strand at 638.480 kb on - strand at 638.499 kb on + strand at 638.507 kb on - strand at 638.531 kb on - strand at 638.544 kb on + strand at 638.629 kb on + strand at 638.648 kb on + strand at 638.697 kb on - strand at 638.704 kb on - strand at 638.709 kb on - strand at 638.741 kb on - strand at 638.873 kb on + strand, within creA at 638.948 kb on + strand, within creA at 639.003 kb on - strand, within creA at 639.076 kb on + strand, within creA at 639.079 kb on - strand, within creA at 639.106 kb on - strand, within creA at 639.111 kb on + strand at 639.111 kb on + strand at 639.113 kb on + strand at 639.158 kb on - strand at 639.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 636,952 + ald DVU0571 0.52 -0.4 637,143 - ald DVU0571 0.69 +0.4 637,143 - ald DVU0571 0.69 +0.4 637,163 - ald DVU0571 0.71 -1.2 637,253 + ald DVU0571 0.79 -1.0 637,261 - ald DVU0571 0.80 -0.5 637,288 + ald DVU0571 0.82 -0.3 637,289 + ald DVU0571 0.82 +0.7 637,295 + ald DVU0571 0.83 -0.3 637,302 + ald DVU0571 0.83 +0.2 637,302 + ald DVU0571 0.83 +0.4 637,310 - ald DVU0571 0.84 +1.1 637,310 - ald DVU0571 0.84 -0.0 637,312 + ald DVU0571 0.84 -0.3 637,320 - ald DVU0571 0.85 +0.7 637,327 + ald DVU0571 0.86 -0.4 637,327 + ald DVU0571 0.86 -0.2 637,335 - ald DVU0571 0.86 +1.6 637,355 + ald DVU0571 0.88 +0.9 637,480 + -0.2 637,504 - -0.3 637,588 - -0.5 637,614 + -0.2 637,641 - +0.6 637,939 + DVU0572 0.14 -0.1 637,939 + DVU0572 0.14 +1.1 637,944 + DVU0572 0.15 +1.6 637,973 - DVU0572 0.24 +0.0 638,099 - DVU0572 0.61 -0.0 638,156 + DVU0572 0.78 +0.7 638,164 - DVU0572 0.80 +0.4 638,178 + DVU0572 0.84 -0.1 638,180 + DVU0572 0.85 -0.4 638,184 - DVU0572 0.86 -0.1 638,184 - DVU0572 0.86 +0.1 638,207 - +0.0 638,247 + -1.0 638,275 - +1.4 638,282 - -0.4 638,309 + -0.7 638,316 + -0.2 638,324 - -0.4 638,335 + -0.4 638,471 + -1.2 638,480 - -0.1 638,499 + -0.0 638,507 - -0.4 638,531 - -0.0 638,544 + +0.5 638,629 + -0.0 638,648 + +0.5 638,697 - +0.0 638,704 - -0.2 638,709 - -0.2 638,741 - -0.2 638,873 + creA DVU0573 0.35 -0.0 638,948 + creA DVU0573 0.53 +0.2 639,003 - creA DVU0573 0.65 -0.1 639,076 + creA DVU0573 0.83 +0.5 639,079 - creA DVU0573 0.83 -0.0 639,106 - creA DVU0573 0.90 -0.1 639,111 + -0.4 639,111 + -0.4 639,113 + -0.4 639,158 - -0.2 639,206 - +1.0
Or see this region's nucleotide sequence