Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0568 and flrA are separated by 278 nucleotides flrA and DVU0570 overlap by 4 nucleotides DVU0570 and ald are separated by 205 nucleotides
DVU0568: DVU0568 - rhodanese-like domain protein (TIGR), at 633,096 to 634,136
DVU0568
DVU0569: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 634,415 to 635,995
flrA
DVU0570: DVU0570 - hypothetical protein (TIGR), at 635,992 to 636,168
DVU0570
DVU0571: ald - alanine dehydrogenase (TIGR), at 636,374 to 637,486
ald
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1 at 633.462 kb on - strand, within DVU0568 at 633.482 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.510 kb on - strand, within DVU0568 at 633.530 kb on + strand, within DVU0568 at 633.535 kb on + strand, within DVU0568 at 633.538 kb on - strand, within DVU0568 at 633.543 kb on - strand, within DVU0568 at 633.548 kb on - strand, within DVU0568 at 633.584 kb on + strand, within DVU0568 at 633.697 kb on + strand, within DVU0568 at 633.762 kb on - strand, within DVU0568 at 633.772 kb on + strand, within DVU0568 at 633.780 kb on - strand, within DVU0568 at 633.790 kb on + strand, within DVU0568 at 633.798 kb on - strand, within DVU0568 at 633.858 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.863 kb on - strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.907 kb on + strand, within DVU0568 at 633.915 kb on - strand, within DVU0568 at 633.919 kb on + strand, within DVU0568 at 633.935 kb on + strand, within DVU0568 at 633.994 kb on - strand, within DVU0568 at 633.996 kb on - strand, within DVU0568 at 634.080 kb on + strand at 634.110 kb on + strand at 634.149 kb on + strand at 634.177 kb on + strand at 634.184 kb on + strand at 634.211 kb on - strand at 634.211 kb on - strand at 634.305 kb on - strand at 634.425 kb on + strand at 634.452 kb on - strand at 634.563 kb on + strand at 634.563 kb on - strand at 634.600 kb on + strand, within flrA at 634.615 kb on - strand, within flrA at 634.637 kb on + strand, within flrA at 634.637 kb on + strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.645 kb on - strand, within flrA at 634.671 kb on + strand, within flrA at 634.763 kb on + strand, within flrA at 634.771 kb on - strand, within flrA at 634.771 kb on - strand, within flrA at 634.793 kb on - strand, within flrA at 634.813 kb on + strand, within flrA at 634.832 kb on - strand, within flrA at 634.946 kb on - strand, within flrA at 635.049 kb on + strand, within flrA at 635.053 kb on + strand, within flrA at 635.185 kb on + strand, within flrA at 635.231 kb on + strand, within flrA at 635.440 kb on - strand, within flrA at 635.479 kb on + strand, within flrA at 635.518 kb on - strand, within flrA at 635.549 kb on - strand, within flrA at 635.553 kb on - strand, within flrA at 635.571 kb on + strand, within flrA at 635.631 kb on - strand, within flrA at 635.702 kb on + strand, within flrA at 635.775 kb on + strand, within flrA at 635.783 kb on - strand, within flrA at 635.785 kb on + strand, within flrA at 635.817 kb on + strand, within flrA at 635.836 kb on - strand, within flrA at 635.841 kb on - strand at 636.258 kb on + strand at 636.266 kb on - strand at 636.294 kb on + strand at 636.307 kb on + strand at 636.438 kb on + strand at 636.446 kb on - strand at 636.470 kb on + strand at 636.475 kb on + strand at 636.483 kb on - strand at 636.494 kb on - strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.731 kb on + strand, within ald at 636.764 kb on + strand, within ald at 636.805 kb on - strand, within ald at 636.867 kb on + strand, within ald at 636.952 kb on + strand, within ald
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 633,462 - DVU0568 0.35 +0.0 633,482 - DVU0568 0.37 -0.3 633,510 - DVU0568 0.40 -1.2 633,510 - DVU0568 0.40 -0.0 633,530 + DVU0568 0.42 +1.7 633,535 + DVU0568 0.42 +0.5 633,538 - DVU0568 0.42 +0.2 633,543 - DVU0568 0.43 +0.2 633,548 - DVU0568 0.43 -0.3 633,584 + DVU0568 0.47 +0.7 633,697 + DVU0568 0.58 +0.1 633,762 - DVU0568 0.64 +0.3 633,772 + DVU0568 0.65 -1.2 633,780 - DVU0568 0.66 +0.4 633,790 + DVU0568 0.67 -1.0 633,798 - DVU0568 0.67 +0.8 633,858 - DVU0568 0.73 -0.5 633,863 - DVU0568 0.74 -0.1 633,863 - DVU0568 0.74 -1.4 633,907 + DVU0568 0.78 -0.1 633,907 + DVU0568 0.78 +0.0 633,915 - DVU0568 0.79 -0.4 633,919 + DVU0568 0.79 -1.1 633,935 + DVU0568 0.81 -0.2 633,994 - DVU0568 0.86 -0.3 633,996 - DVU0568 0.86 -0.1 634,080 + -0.6 634,110 + +0.7 634,149 + -0.9 634,177 + +0.1 634,184 + -0.6 634,211 - +0.0 634,211 - -0.8 634,305 - -0.3 634,425 + +0.6 634,452 - +0.1 634,563 + -0.6 634,563 - -0.6 634,600 + flrA DVU0569 0.12 +0.3 634,615 - flrA DVU0569 0.13 +1.1 634,637 + flrA DVU0569 0.14 +0.1 634,637 + flrA DVU0569 0.14 -0.1 634,645 - flrA DVU0569 0.15 +0.0 634,645 - flrA DVU0569 0.15 +0.3 634,645 - flrA DVU0569 0.15 -0.1 634,645 - flrA DVU0569 0.15 -0.1 634,671 + flrA DVU0569 0.16 +0.3 634,763 + flrA DVU0569 0.22 +0.2 634,771 - flrA DVU0569 0.23 -0.3 634,771 - flrA DVU0569 0.23 +0.3 634,793 - flrA DVU0569 0.24 +0.2 634,813 + flrA DVU0569 0.25 -0.0 634,832 - flrA DVU0569 0.26 +0.4 634,946 - flrA DVU0569 0.34 -0.0 635,049 + flrA DVU0569 0.40 -0.2 635,053 + flrA DVU0569 0.40 +0.2 635,185 + flrA DVU0569 0.49 +0.8 635,231 + flrA DVU0569 0.52 -0.3 635,440 - flrA DVU0569 0.65 -2.4 635,479 + flrA DVU0569 0.67 -0.4 635,518 - flrA DVU0569 0.70 +0.3 635,549 - flrA DVU0569 0.72 +0.1 635,553 - flrA DVU0569 0.72 +0.2 635,571 + flrA DVU0569 0.73 +1.3 635,631 - flrA DVU0569 0.77 -0.1 635,702 + flrA DVU0569 0.81 +0.7 635,775 + flrA DVU0569 0.86 -0.1 635,783 - flrA DVU0569 0.87 +1.2 635,785 + flrA DVU0569 0.87 -0.0 635,817 + flrA DVU0569 0.89 -0.4 635,836 - flrA DVU0569 0.90 +0.0 635,841 - +0.1 636,258 + +0.4 636,266 - -0.1 636,294 + +0.5 636,307 + -0.2 636,438 + +0.5 636,446 - -0.0 636,470 + +0.8 636,475 + -1.0 636,483 - -0.1 636,494 - ald DVU0571 0.11 +0.0 636,692 + ald DVU0571 0.29 +0.6 636,692 + ald DVU0571 0.29 -0.4 636,692 + ald DVU0571 0.29 +0.1 636,692 + ald DVU0571 0.29 -0.5 636,731 + ald DVU0571 0.32 -0.3 636,764 + ald DVU0571 0.35 +0.7 636,805 - ald DVU0571 0.39 +0.1 636,867 + ald DVU0571 0.44 +0.3 636,952 + ald DVU0571 0.52 -0.4
Or see this region's nucleotide sequence