Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0549 and livG overlap by 1 nucleotides livG and livF overlap by 8 nucleotides livF and DVU0552 are separated by 201 nucleotides
DVU0549: DVU0549 - proline/arginine ABC transporter, permease component <small>(from data)</small>, at 619,154 to 620,377
DVU0549
DVU0550: livG - high-affinity branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 620,377 to 621,165
livG
DVU0551: livF - high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR), at 621,158 to 621,862
livF
DVU0552: DVU0552 - conserved hypothetical protein (TIGR), at 622,064 to 623,029
DVU0552
Position (kb) 620
621
622 Strain fitness (log2 ratio) -2
-1
0
1 at 619.457 kb on + strand, within DVU0549 at 619.471 kb on + strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.518 kb on - strand, within DVU0549 at 619.615 kb on - strand, within DVU0549 at 619.616 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.660 kb on - strand, within DVU0549 at 619.678 kb on - strand, within DVU0549 at 619.717 kb on + strand, within DVU0549 at 619.794 kb on + strand, within DVU0549 at 619.877 kb on + strand, within DVU0549 at 619.965 kb on + strand, within DVU0549 at 620.000 kb on + strand, within DVU0549 at 620.007 kb on + strand, within DVU0549 at 620.091 kb on + strand, within DVU0549 at 620.095 kb on - strand, within DVU0549 at 620.100 kb on - strand, within DVU0549 at 620.184 kb on + strand, within DVU0549 at 620.192 kb on - strand, within DVU0549 at 620.322 kb on + strand at 620.455 kb on - strand at 620.459 kb on + strand, within livG at 620.481 kb on + strand, within livG at 620.667 kb on + strand, within livG at 620.797 kb on + strand, within livG at 620.826 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.850 kb on + strand, within livG at 620.858 kb on - strand, within livG at 620.858 kb on - strand, within livG at 620.858 kb on - strand, within livG at 620.916 kb on - strand, within livG at 621.000 kb on + strand, within livG at 621.044 kb on - strand, within livG at 621.098 kb on + strand at 621.101 kb on - strand at 621.130 kb on + strand at 621.167 kb on - strand at 621.167 kb on - strand at 621.177 kb on - strand at 621.177 kb on - strand at 621.221 kb on - strand at 621.280 kb on - strand, within livF at 621.280 kb on - strand, within livF at 621.287 kb on - strand, within livF at 621.311 kb on + strand, within livF at 621.321 kb on + strand, within livF at 621.461 kb on + strand, within livF at 621.552 kb on + strand, within livF at 621.552 kb on + strand, within livF at 621.555 kb on - strand, within livF at 621.756 kb on - strand, within livF at 621.930 kb on + strand at 621.967 kb on - strand at 621.999 kb on - strand at 622.005 kb on - strand at 622.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 619,457 + DVU0549 0.25 -1.0 619,471 + DVU0549 0.26 +0.1 619,518 - DVU0549 0.30 -0.1 619,518 - DVU0549 0.30 +0.6 619,615 - DVU0549 0.38 +0.0 619,616 - DVU0549 0.38 +0.2 619,660 - DVU0549 0.41 +0.5 619,660 - DVU0549 0.41 -2.5 619,678 - DVU0549 0.43 -0.4 619,717 + DVU0549 0.46 +0.7 619,794 + DVU0549 0.52 -0.2 619,877 + DVU0549 0.59 +0.0 619,965 + DVU0549 0.66 +1.1 620,000 + DVU0549 0.69 -0.6 620,007 + DVU0549 0.70 +0.3 620,091 + DVU0549 0.77 -0.0 620,095 - DVU0549 0.77 -0.4 620,100 - DVU0549 0.77 -0.1 620,184 + DVU0549 0.84 -0.2 620,192 - DVU0549 0.85 +0.5 620,322 + +0.1 620,455 - -0.0 620,459 + livG DVU0550 0.10 -0.8 620,481 + livG DVU0550 0.13 +0.7 620,667 + livG DVU0550 0.37 +0.2 620,797 + livG DVU0550 0.53 +0.9 620,826 + livG DVU0550 0.57 +0.1 620,850 + livG DVU0550 0.60 +0.8 620,850 + livG DVU0550 0.60 +0.1 620,850 + livG DVU0550 0.60 +0.1 620,858 - livG DVU0550 0.61 -0.1 620,858 - livG DVU0550 0.61 -0.7 620,858 - livG DVU0550 0.61 +0.6 620,916 - livG DVU0550 0.68 -0.8 621,000 + livG DVU0550 0.79 -0.1 621,044 - livG DVU0550 0.85 +0.3 621,098 + +0.1 621,101 - -0.3 621,130 + +0.6 621,167 - +0.2 621,167 - -0.3 621,177 - +0.1 621,177 - -0.1 621,221 - +1.1 621,280 - livF DVU0551 0.17 -1.1 621,280 - livF DVU0551 0.17 -0.8 621,287 - livF DVU0551 0.18 +0.3 621,311 + livF DVU0551 0.22 +0.2 621,321 + livF DVU0551 0.23 +0.2 621,461 + livF DVU0551 0.43 +1.2 621,552 + livF DVU0551 0.56 -1.7 621,552 + livF DVU0551 0.56 -0.2 621,555 - livF DVU0551 0.56 +0.9 621,756 - livF DVU0551 0.85 +0.8 621,930 + +0.1 621,967 - +1.5 621,999 - -0.2 622,005 - +0.6 622,010 - +0.3
Or see this region's nucleotide sequence