Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0547

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0544 and DVU0545 overlap by 1 nucleotidesDVU0545 and DVU0547 are separated by 448 nucleotidesDVU0547 and livH are separated by 103 nucleotides DVU0544: DVU0544 - hypothetical protein (TIGR), at 615,721 to 616,122 DVU0544 DVU0545: DVU0545 - conserved hypothetical protein (TIGR), at 616,122 to 616,547 DVU0545 DVU0547: DVU0547 - high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR), at 616,996 to 618,114 DVU0547 DVU0548: livH - high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR), at 618,218 to 619,126 livH Position (kb) 616 617 618 619Strain fitness (log2 ratio) -1 0 1at 616.017 kb on + strand, within DVU0544at 616.086 kb on + strandat 616.133 kb on - strandat 616.178 kb on - strand, within DVU0545at 616.193 kb on - strand, within DVU0545at 616.258 kb on + strand, within DVU0545at 616.343 kb on + strand, within DVU0545at 616.353 kb on - strand, within DVU0545at 616.374 kb on + strand, within DVU0545at 616.388 kb on - strand, within DVU0545at 616.471 kb on + strand, within DVU0545at 616.471 kb on + strand, within DVU0545at 616.479 kb on - strand, within DVU0545at 616.492 kb on - strand, within DVU0545at 616.515 kb on + strandat 616.548 kb on + strandat 616.554 kb on - strandat 616.652 kb on - strandat 616.696 kb on - strandat 616.698 kb on + strandat 616.719 kb on - strandat 616.900 kb on + strandat 617.009 kb on + strandat 617.052 kb on - strandat 617.053 kb on + strandat 617.085 kb on + strandat 617.113 kb on - strand, within DVU0547at 617.120 kb on + strand, within DVU0547at 617.125 kb on + strand, within DVU0547at 617.174 kb on - strand, within DVU0547at 617.226 kb on + strand, within DVU0547at 617.234 kb on - strand, within DVU0547at 617.301 kb on - strand, within DVU0547at 617.313 kb on + strand, within DVU0547at 617.386 kb on - strand, within DVU0547at 617.405 kb on + strand, within DVU0547at 617.529 kb on + strand, within DVU0547at 617.537 kb on - strand, within DVU0547at 617.582 kb on - strand, within DVU0547at 617.589 kb on + strand, within DVU0547at 617.609 kb on + strand, within DVU0547at 617.619 kb on + strand, within DVU0547at 617.665 kb on + strand, within DVU0547at 617.687 kb on - strand, within DVU0547at 617.796 kb on + strand, within DVU0547at 617.835 kb on - strand, within DVU0547at 617.868 kb on + strand, within DVU0547at 617.893 kb on - strand, within DVU0547at 617.893 kb on - strand, within DVU0547at 618.035 kb on - strandat 618.059 kb on + strandat 618.136 kb on - strandat 618.292 kb on + strandat 618.292 kb on + strandat 618.297 kb on + strandat 618.333 kb on - strand, within livHat 618.449 kb on + strand, within livHat 618.464 kb on + strand, within livHat 618.464 kb on + strand, within livHat 618.501 kb on - strand, within livHat 618.521 kb on - strand, within livHat 618.588 kb on - strand, within livHat 618.699 kb on + strand, within livHat 618.706 kb on + strand, within livHat 618.716 kb on - strand, within livHat 618.722 kb on + strand, within livHat 618.739 kb on + strand, within livHat 618.744 kb on + strand, within livHat 618.747 kb on - strand, within livHat 618.747 kb on - strand, within livHat 618.747 kb on - strand, within livHat 618.777 kb on + strand, within livHat 618.801 kb on + strand, within livHat 618.815 kb on - strand, within livHat 618.924 kb on - strand, within livHat 619.060 kb on + strandat 619.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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616,017 + DVU0544 0.74 -0.0
616,086 + +0.5
616,133 - -0.6
616,178 - DVU0545 0.13 -0.5
616,193 - DVU0545 0.17 -0.9
616,258 + DVU0545 0.32 -0.3
616,343 + DVU0545 0.52 -1.1
616,353 - DVU0545 0.54 -0.3
616,374 + DVU0545 0.59 -0.2
616,388 - DVU0545 0.62 -0.1
616,471 + DVU0545 0.82 -0.8
616,471 + DVU0545 0.82 +0.2
616,479 - DVU0545 0.84 +1.7
616,492 - DVU0545 0.87 -0.0
616,515 + -0.5
616,548 + -0.3
616,554 - -0.7
616,652 - +0.3
616,696 - -0.1
616,698 + -0.8
616,719 - +0.4
616,900 + +0.1
617,009 + -0.4
617,052 - +0.2
617,053 + -0.2
617,085 + +0.8
617,113 - DVU0547 0.10 +1.5
617,120 + DVU0547 0.11 +0.0
617,125 + DVU0547 0.12 +1.7
617,174 - DVU0547 0.16 +1.5
617,226 + DVU0547 0.21 -0.1
617,234 - DVU0547 0.21 +0.2
617,301 - DVU0547 0.27 +1.0
617,313 + DVU0547 0.28 +0.5
617,386 - DVU0547 0.35 +0.1
617,405 + DVU0547 0.37 +0.2
617,529 + DVU0547 0.48 +0.1
617,537 - DVU0547 0.48 -0.2
617,582 - DVU0547 0.52 +0.4
617,589 + DVU0547 0.53 -0.4
617,609 + DVU0547 0.55 -1.1
617,619 + DVU0547 0.56 +0.3
617,665 + DVU0547 0.60 -0.5
617,687 - DVU0547 0.62 +0.4
617,796 + DVU0547 0.71 +0.2
617,835 - DVU0547 0.75 -0.5
617,868 + DVU0547 0.78 +0.8
617,893 - DVU0547 0.80 +0.2
617,893 - DVU0547 0.80 +0.2
618,035 - +0.2
618,059 + +0.4
618,136 - +0.3
618,292 + -0.1
618,292 + +0.4
618,297 + +0.7
618,333 - livH DVU0548 0.13 -0.1
618,449 + livH DVU0548 0.25 +0.5
618,464 + livH DVU0548 0.27 +0.2
618,464 + livH DVU0548 0.27 -0.8
618,501 - livH DVU0548 0.31 +0.0
618,521 - livH DVU0548 0.33 -0.6
618,588 - livH DVU0548 0.41 -1.1
618,699 + livH DVU0548 0.53 -0.1
618,706 + livH DVU0548 0.54 +0.4
618,716 - livH DVU0548 0.55 +0.2
618,722 + livH DVU0548 0.55 -0.2
618,739 + livH DVU0548 0.57 +0.4
618,744 + livH DVU0548 0.58 +0.0
618,747 - livH DVU0548 0.58 +0.1
618,747 - livH DVU0548 0.58 -0.2
618,747 - livH DVU0548 0.58 +0.1
618,777 + livH DVU0548 0.61 -0.0
618,801 + livH DVU0548 0.64 -0.0
618,815 - livH DVU0548 0.66 -0.6
618,924 - livH DVU0548 0.78 +0.8
619,060 + +0.1
619,113 - +0.1

Or see this region's nucleotide sequence