Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yviF and flgM are separated by 350 nucleotides flgM and DVU0524 are separated by 25 nucleotides DVU0524 and DVU0525 are separated by 217 nucleotides DVU0525 and DVU0526 overlap by 8 nucleotides
DVU0522: yviF - conserved hypothetical protein (TIGR), at 596,422 to 596,943
yviF
DVU0523: flgM - negative regulator of flagellin synthesis FlgM (TIGR), at 597,294 to 597,608
flgM
DVU0524: DVU0524 - hypothetical protein (TIGR), at 597,634 to 598,050
DVU0524
DVU0525: DVU0525 - transcriptional regulator, MarR family (TIGR), at 598,268 to 598,936
DVU0525
DVU0526: DVU0526 - drug resistance transporter, putative (TIGR), at 598,929 to 600,332
DVU0526
Position (kb) 597
598
599 Strain fitness (log2 ratio) -2
-1
0
1 at 596.686 kb on + strand, within yviF at 596.694 kb on + strand, within yviF at 596.756 kb on + strand, within yviF at 596.771 kb on + strand, within yviF at 596.938 kb on + strand at 596.938 kb on + strand at 597.143 kb on - strand at 597.164 kb on - strand at 597.259 kb on + strand at 597.267 kb on - strand at 597.327 kb on - strand, within flgM at 597.436 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.473 kb on + strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.481 kb on - strand, within flgM at 597.560 kb on + strand, within flgM at 597.573 kb on - strand, within flgM at 597.582 kb on - strand at 597.677 kb on + strand, within DVU0524 at 597.690 kb on - strand, within DVU0524 at 597.774 kb on + strand, within DVU0524 at 597.776 kb on + strand, within DVU0524 at 597.813 kb on - strand, within DVU0524 at 597.830 kb on + strand, within DVU0524 at 598.012 kb on - strand at 598.090 kb on - strand at 598.278 kb on - strand at 598.318 kb on + strand at 598.345 kb on - strand, within DVU0525 at 598.367 kb on - strand, within DVU0525 at 598.426 kb on - strand, within DVU0525 at 598.432 kb on + strand, within DVU0525 at 598.483 kb on + strand, within DVU0525 at 598.499 kb on + strand, within DVU0525 at 598.552 kb on - strand, within DVU0525 at 598.647 kb on + strand, within DVU0525 at 598.698 kb on + strand, within DVU0525 at 598.706 kb on - strand, within DVU0525 at 598.728 kb on - strand, within DVU0525 at 598.746 kb on - strand, within DVU0525 at 598.771 kb on + strand, within DVU0525 at 598.771 kb on + strand, within DVU0525 at 598.783 kb on - strand, within DVU0525 at 598.813 kb on - strand, within DVU0525 at 598.843 kb on - strand, within DVU0525 at 598.851 kb on + strand, within DVU0525 at 598.856 kb on + strand, within DVU0525 at 598.856 kb on + strand, within DVU0525 at 598.856 kb on + strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.864 kb on - strand, within DVU0525 at 598.920 kb on + strand at 598.925 kb on + strand at 598.943 kb on + strand at 598.974 kb on + strand at 598.977 kb on + strand at 598.999 kb on - strand at 599.024 kb on + strand at 599.039 kb on - strand at 599.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 596,686 + yviF DVU0522 0.51 +1.2 596,694 + yviF DVU0522 0.52 +0.7 596,756 + yviF DVU0522 0.64 +1.0 596,771 + yviF DVU0522 0.67 +1.4 596,938 + -0.9 596,938 + +0.3 597,143 - -0.4 597,164 - -0.3 597,259 + -0.2 597,267 - -0.0 597,327 - flgM DVU0523 0.10 -0.2 597,436 + flgM DVU0523 0.45 -0.3 597,473 + flgM DVU0523 0.57 -0.0 597,473 + flgM DVU0523 0.57 +0.5 597,473 + flgM DVU0523 0.57 -0.2 597,473 + flgM DVU0523 0.57 +0.1 597,473 + flgM DVU0523 0.57 -0.2 597,473 + flgM DVU0523 0.57 +0.6 597,473 + flgM DVU0523 0.57 +0.1 597,473 + flgM DVU0523 0.57 -1.0 597,473 + flgM DVU0523 0.57 -1.4 597,481 - flgM DVU0523 0.59 -0.3 597,481 - flgM DVU0523 0.59 +0.3 597,481 - flgM DVU0523 0.59 -0.2 597,481 - flgM DVU0523 0.59 -0.1 597,560 + flgM DVU0523 0.84 -0.0 597,573 - flgM DVU0523 0.89 -0.1 597,582 - -1.1 597,677 + DVU0524 0.10 -0.7 597,690 - DVU0524 0.13 -0.0 597,774 + DVU0524 0.34 -0.0 597,776 + DVU0524 0.34 +0.0 597,813 - DVU0524 0.43 +1.4 597,830 + DVU0524 0.47 -0.2 598,012 - -1.2 598,090 - +0.0 598,278 - +0.2 598,318 + -0.1 598,345 - DVU0525 0.12 +0.0 598,367 - DVU0525 0.15 +0.3 598,426 - DVU0525 0.24 +1.0 598,432 + DVU0525 0.25 +0.0 598,483 + DVU0525 0.32 -0.1 598,499 + DVU0525 0.35 +0.1 598,552 - DVU0525 0.42 +0.2 598,647 + DVU0525 0.57 -0.2 598,698 + DVU0525 0.64 -0.3 598,706 - DVU0525 0.65 +0.3 598,728 - DVU0525 0.69 +0.1 598,746 - DVU0525 0.71 +1.0 598,771 + DVU0525 0.75 -1.2 598,771 + DVU0525 0.75 -0.1 598,783 - DVU0525 0.77 -0.0 598,813 - DVU0525 0.81 +1.2 598,843 - DVU0525 0.86 -0.6 598,851 + DVU0525 0.87 -2.1 598,856 + DVU0525 0.88 -0.2 598,856 + DVU0525 0.88 -0.2 598,856 + DVU0525 0.88 -0.5 598,864 - DVU0525 0.89 +1.1 598,864 - DVU0525 0.89 +0.9 598,864 - DVU0525 0.89 -1.1 598,864 - DVU0525 0.89 -0.3 598,864 - DVU0525 0.89 +1.4 598,864 - DVU0525 0.89 -0.2 598,920 + +0.1 598,925 + -0.1 598,943 + -0.6 598,974 + +0.2 598,977 + -0.5 598,999 - -0.7 599,024 + -2.6 599,039 - +0.1 599,045 - +0.8
Or see this region's nucleotide sequence