Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0460 and DVU0461 are separated by 8 nucleotides DVU0461 and DVU0462 are separated by 2 nucleotides DVU0462 and aroA overlap by 1 nucleotides
DVU0460: DVU0460 - predicted phospho-2-dehydro-3-deoxyheptonate aldolase (TIGR), at 527,671 to 528,471
DVU0460
DVU0461: DVU0461 - predicted 3-dehydroquinate synthase (TIGR), at 528,480 to 529,451
DVU0461
DVU0462: DVU0462 - chorismate mutase/prephenate dehydratase (TIGR), at 529,454 to 530,629
DVU0462
DVU0463: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR), at 530,629 to 531,948
aroA
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 528.457 kb on - strand at 528.731 kb on - strand, within DVU0461 at 529.569 kb on + strand at 529.581 kb on + strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.589 kb on - strand, within DVU0462 at 529.624 kb on + strand, within DVU0462 at 529.657 kb on - strand, within DVU0462 at 529.699 kb on + strand, within DVU0462 at 529.768 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.861 kb on + strand, within DVU0462 at 529.869 kb on - strand, within DVU0462 at 529.926 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 529.941 kb on + strand, within DVU0462 at 530.011 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.038 kb on + strand, within DVU0462 at 530.092 kb on - strand, within DVU0462 at 530.212 kb on - strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.356 kb on + strand, within DVU0462 at 530.364 kb on - strand, within DVU0462 at 530.404 kb on + strand, within DVU0462 at 530.426 kb on + strand, within DVU0462 at 530.440 kb on - strand, within DVU0462 at 530.514 kb on - strand at 530.518 kb on + strand at 530.526 kb on - strand at 530.561 kb on + strand at 530.585 kb on + strand at 530.620 kb on - strand at 530.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 528,457 - -2.7 528,731 - DVU0461 0.26 -1.1 529,569 + -3.0 529,581 + DVU0462 0.11 -2.3 529,589 - DVU0462 0.11 -2.8 529,589 - DVU0462 0.11 -1.2 529,624 + DVU0462 0.14 -3.5 529,657 - DVU0462 0.17 -3.4 529,699 + DVU0462 0.21 -2.8 529,768 + DVU0462 0.27 -3.0 529,861 + DVU0462 0.35 -1.9 529,861 + DVU0462 0.35 -1.8 529,869 - DVU0462 0.35 -2.2 529,926 + DVU0462 0.40 -2.8 529,941 + DVU0462 0.41 -3.0 529,941 + DVU0462 0.41 -2.3 530,011 + DVU0462 0.47 +0.1 530,038 + DVU0462 0.50 -1.2 530,038 + DVU0462 0.50 -2.0 530,092 - DVU0462 0.54 -3.2 530,212 - DVU0462 0.64 -3.1 530,356 + DVU0462 0.77 -3.0 530,356 + DVU0462 0.77 -2.8 530,356 + DVU0462 0.77 -2.6 530,364 - DVU0462 0.77 -2.0 530,404 + DVU0462 0.81 -2.6 530,426 + DVU0462 0.83 -2.7 530,440 - DVU0462 0.84 -3.1 530,514 - -2.1 530,518 + -1.9 530,526 - -1.4 530,561 + -0.9 530,585 + -0.5 530,620 - -0.4 530,620 - -0.3
Or see this region's nucleotide sequence