Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0415

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttme and pepA are separated by 57 nucleotidespepA and DVU0416 are separated by 254 nucleotides DVU0414: tme - NADP-dependent malic enzyme-related protein (TIGR), at 463,867 to 465,186 tme DVU0415: pepA - cytosol aminopeptidase (TIGR), at 465,244 to 466,767 pepA DVU0416: DVU0416 - GGDEF domain protein (TIGR), at 467,022 to 468,140 DVU0416 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1at 464.373 kb on - strand, within tmeat 464.386 kb on - strand, within tmeat 464.420 kb on - strand, within tmeat 464.435 kb on - strand, within tmeat 464.519 kb on - strand, within tmeat 464.520 kb on - strand, within tmeat 464.580 kb on - strand, within tmeat 464.715 kb on - strand, within tmeat 464.751 kb on + strand, within tmeat 464.751 kb on + strand, within tmeat 464.751 kb on + strand, within tmeat 464.759 kb on - strand, within tmeat 464.759 kb on - strand, within tmeat 464.766 kb on - strand, within tmeat 464.873 kb on - strand, within tmeat 464.879 kb on + strand, within tmeat 464.930 kb on - strand, within tmeat 464.996 kb on - strand, within tmeat 464.996 kb on - strand, within tmeat 465.008 kb on + strand, within tmeat 465.115 kb on - strandat 465.126 kb on + strandat 465.134 kb on - strandat 465.245 kb on - strandat 465.245 kb on - strandat 465.331 kb on - strandat 465.495 kb on + strand, within pepAat 465.604 kb on + strand, within pepAat 465.606 kb on + strand, within pepAat 465.644 kb on - strand, within pepAat 465.660 kb on + strand, within pepAat 465.663 kb on - strand, within pepAat 465.675 kb on + strand, within pepAat 465.683 kb on + strand, within pepAat 465.685 kb on + strand, within pepAat 465.746 kb on - strand, within pepAat 465.747 kb on - strand, within pepAat 465.765 kb on - strand, within pepAat 465.798 kb on + strand, within pepAat 465.940 kb on + strand, within pepAat 465.969 kb on - strand, within pepAat 466.085 kb on + strand, within pepAat 466.129 kb on + strand, within pepAat 466.209 kb on - strand, within pepAat 466.214 kb on - strand, within pepAat 466.214 kb on - strand, within pepAat 466.221 kb on + strand, within pepAat 466.296 kb on - strand, within pepAat 466.313 kb on + strand, within pepAat 466.313 kb on + strand, within pepAat 466.315 kb on + strand, within pepAat 466.321 kb on - strand, within pepAat 466.321 kb on - strand, within pepAat 466.337 kb on + strand, within pepAat 466.343 kb on - strand, within pepAat 466.345 kb on - strand, within pepAat 466.442 kb on - strand, within pepAat 466.458 kb on - strand, within pepAat 466.497 kb on + strand, within pepAat 466.573 kb on - strand, within pepAat 466.633 kb on - strandat 466.645 kb on + strandat 466.653 kb on - strandat 466.692 kb on + strandat 466.806 kb on - strandat 466.992 kb on - strandat 467.175 kb on - strand, within DVU0416at 467.179 kb on + strand, within DVU0416at 467.279 kb on + strand, within DVU0416at 467.389 kb on - strand, within DVU0416at 467.389 kb on - strand, within DVU0416at 467.532 kb on + strand, within DVU0416at 467.534 kb on - strand, within DVU0416at 467.541 kb on - strand, within DVU0416at 467.570 kb on + strand, within DVU0416at 467.588 kb on - strand, within DVU0416at 467.705 kb on + strand, within DVU0416at 467.705 kb on + strand, within DVU0416at 467.713 kb on - strand, within DVU0416at 467.728 kb on - strand, within DVU0416at 467.749 kb on + strand, within DVU0416

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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464,373 - tme DVU0414 0.38 -0.4
464,386 - tme DVU0414 0.39 -0.8
464,420 - tme DVU0414 0.42 +0.2
464,435 - tme DVU0414 0.43 -1.1
464,519 - tme DVU0414 0.49 +0.4
464,520 - tme DVU0414 0.49 -0.3
464,580 - tme DVU0414 0.54 -0.4
464,715 - tme DVU0414 0.64 -0.1
464,751 + tme DVU0414 0.67 -0.3
464,751 + tme DVU0414 0.67 -0.7
464,751 + tme DVU0414 0.67 -0.7
464,759 - tme DVU0414 0.68 +0.9
464,759 - tme DVU0414 0.68 -1.0
464,766 - tme DVU0414 0.68 -1.0
464,873 - tme DVU0414 0.76 -1.3
464,879 + tme DVU0414 0.77 +0.0
464,930 - tme DVU0414 0.81 -0.3
464,996 - tme DVU0414 0.86 +1.0
464,996 - tme DVU0414 0.86 -0.1
465,008 + tme DVU0414 0.86 +0.2
465,115 - -0.0
465,126 + -0.6
465,134 - -0.7
465,245 - -1.5
465,245 - -1.7
465,331 - +0.8
465,495 + pepA DVU0415 0.16 -0.4
465,604 + pepA DVU0415 0.24 -1.1
465,606 + pepA DVU0415 0.24 +0.0
465,644 - pepA DVU0415 0.26 -1.2
465,660 + pepA DVU0415 0.27 -0.4
465,663 - pepA DVU0415 0.27 +0.8
465,675 + pepA DVU0415 0.28 -1.5
465,683 + pepA DVU0415 0.29 -0.8
465,685 + pepA DVU0415 0.29 -0.7
465,746 - pepA DVU0415 0.33 -1.6
465,747 - pepA DVU0415 0.33 -1.2
465,765 - pepA DVU0415 0.34 -0.6
465,798 + pepA DVU0415 0.36 -1.1
465,940 + pepA DVU0415 0.46 +0.5
465,969 - pepA DVU0415 0.48 -1.6
466,085 + pepA DVU0415 0.55 -1.1
466,129 + pepA DVU0415 0.58 -1.2
466,209 - pepA DVU0415 0.63 -1.4
466,214 - pepA DVU0415 0.64 -2.0
466,214 - pepA DVU0415 0.64 -1.6
466,221 + pepA DVU0415 0.64 -0.1
466,296 - pepA DVU0415 0.69 -0.9
466,313 + pepA DVU0415 0.70 -0.4
466,313 + pepA DVU0415 0.70 -1.6
466,315 + pepA DVU0415 0.70 -0.3
466,321 - pepA DVU0415 0.71 -0.0
466,321 - pepA DVU0415 0.71 -1.2
466,337 + pepA DVU0415 0.72 -1.7
466,343 - pepA DVU0415 0.72 -0.9
466,345 - pepA DVU0415 0.72 -0.9
466,442 - pepA DVU0415 0.79 -1.2
466,458 - pepA DVU0415 0.80 +0.5
466,497 + pepA DVU0415 0.82 -0.8
466,573 - pepA DVU0415 0.87 -2.0
466,633 - -0.9
466,645 + -0.2
466,653 - -1.0
466,692 + -1.3
466,806 - +0.1
466,992 - +0.0
467,175 - DVU0416 0.14 +0.2
467,179 + DVU0416 0.14 +0.8
467,279 + DVU0416 0.23 +0.7
467,389 - DVU0416 0.33 -0.5
467,389 - DVU0416 0.33 -0.5
467,532 + DVU0416 0.46 -0.1
467,534 - DVU0416 0.46 -0.5
467,541 - DVU0416 0.46 -0.2
467,570 + DVU0416 0.49 -0.3
467,588 - DVU0416 0.51 -0.1
467,705 + DVU0416 0.61 +0.3
467,705 + DVU0416 0.61 -0.4
467,713 - DVU0416 0.62 -0.6
467,728 - DVU0416 0.63 -0.2
467,749 + DVU0416 0.65 +0.5

Or see this region's nucleotide sequence