Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0411

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0409 and DVU0410 are separated by 5 nucleotidesDVU0410 and DVU0411 are separated by 161 nucleotidesDVU0411 and DVU0412 are separated by 16 nucleotidesDVU0412 and trk1 are separated by 57 nucleotides DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225 DVU0409 DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836 DVU0410 DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671 DVU0411 DVU0412: DVU0412 - potassium uptake protein TrkA, putative (TIGR), at 461,688 to 462,353 DVU0412 DVU0413: trk1 - potassium uptake protein, TrkH family (TIGR), at 462,411 to 463,748 trk1 Position (kb) 459 460 461 462Strain fitness (log2 ratio) -2 -1 0 1 2at 459.177 kb on + strand, within DVU0409at 459.177 kb on + strand, within DVU0409at 459.202 kb on - strandat 459.448 kb on + strand, within DVU0410at 459.448 kb on + strand, within DVU0410at 459.482 kb on - strand, within DVU0410at 459.500 kb on + strand, within DVU0410at 459.500 kb on + strand, within DVU0410at 459.500 kb on + strand, within DVU0410at 459.562 kb on + strand, within DVU0410at 459.577 kb on + strand, within DVU0410at 459.580 kb on - strand, within DVU0410at 459.585 kb on - strand, within DVU0410at 459.658 kb on + strand, within DVU0410at 459.665 kb on - strand, within DVU0410at 459.685 kb on - strand, within DVU0410at 459.688 kb on + strand, within DVU0410at 459.727 kb on - strand, within DVU0410at 459.737 kb on + strand, within DVU0410at 459.934 kb on + strandat 460.029 kb on - strandat 460.118 kb on - strandat 460.133 kb on + strandat 460.136 kb on - strandat 460.154 kb on - strandat 460.176 kb on - strand, within DVU0411at 460.255 kb on - strand, within DVU0411at 460.294 kb on - strand, within DVU0411at 460.299 kb on + strand, within DVU0411at 460.304 kb on + strand, within DVU0411at 460.316 kb on + strand, within DVU0411at 460.319 kb on - strand, within DVU0411at 460.319 kb on - strand, within DVU0411at 460.321 kb on + strand, within DVU0411at 460.324 kb on - strand, within DVU0411at 460.355 kb on - strand, within DVU0411at 460.423 kb on - strand, within DVU0411at 460.438 kb on - strand, within DVU0411at 460.561 kb on + strand, within DVU0411at 460.566 kb on + strand, within DVU0411at 460.566 kb on + strand, within DVU0411at 460.574 kb on - strand, within DVU0411at 460.589 kb on - strand, within DVU0411at 460.701 kb on + strand, within DVU0411at 460.709 kb on - strand, within DVU0411at 460.764 kb on + strand, within DVU0411at 460.764 kb on + strand, within DVU0411at 460.769 kb on + strand, within DVU0411at 460.876 kb on - strand, within DVU0411at 460.914 kb on + strand, within DVU0411at 460.922 kb on - strand, within DVU0411at 460.924 kb on - strand, within DVU0411at 460.984 kb on + strand, within DVU0411at 461.049 kb on - strand, within DVU0411at 461.132 kb on + strand, within DVU0411at 461.140 kb on - strand, within DVU0411at 461.165 kb on + strand, within DVU0411at 461.361 kb on - strand, within DVU0411at 461.480 kb on - strand, within DVU0411at 461.504 kb on + strandat 461.512 kb on - strandat 461.521 kb on + strandat 461.539 kb on - strandat 461.634 kb on + strandat 461.816 kb on + strand, within DVU0412at 461.824 kb on - strand, within DVU0412at 461.903 kb on + strand, within DVU0412at 461.965 kb on - strand, within DVU0412at 462.012 kb on - strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.046 kb on + strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.054 kb on - strand, within DVU0412at 462.181 kb on - strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.239 kb on + strand, within DVU0412at 462.274 kb on + strand, within DVU0412at 462.329 kb on - strandat 462.360 kb on + strandat 462.368 kb on - strandat 462.591 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.599 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.609 kb on - strand, within trk1at 462.653 kb on - strand, within trk1

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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459,177 + DVU0409 0.86 +1.1
459,177 + DVU0409 0.86 -0.8
459,202 - +0.8
459,448 + DVU0410 0.36 -0.8
459,448 + DVU0410 0.36 +0.8
459,482 - DVU0410 0.41 +0.8
459,500 + DVU0410 0.44 +0.3
459,500 + DVU0410 0.44 +0.7
459,500 + DVU0410 0.44 +0.8
459,562 + DVU0410 0.55 +0.5
459,577 + DVU0410 0.57 +0.1
459,580 - DVU0410 0.58 +0.8
459,585 - DVU0410 0.58 +0.7
459,658 + DVU0410 0.70 -0.6
459,665 - DVU0410 0.72 +0.8
459,685 - DVU0410 0.75 +0.4
459,688 + DVU0410 0.75 +1.9
459,727 - DVU0410 0.82 +1.1
459,737 + DVU0410 0.83 +0.8
459,934 + +0.4
460,029 - +0.8
460,118 - +0.1
460,133 + -0.5
460,136 - +0.5
460,154 - +1.8
460,176 - DVU0411 0.11 +0.1
460,255 - DVU0411 0.15 +0.8
460,294 - DVU0411 0.18 +1.3
460,299 + DVU0411 0.18 +0.4
460,304 + DVU0411 0.18 +0.1
460,316 + DVU0411 0.19 +0.6
460,319 - DVU0411 0.19 +0.7
460,319 - DVU0411 0.19 +1.3
460,321 + DVU0411 0.19 +0.2
460,324 - DVU0411 0.19 +2.2
460,355 - DVU0411 0.21 +1.0
460,423 - DVU0411 0.25 +0.7
460,438 - DVU0411 0.26 +0.8
460,561 + DVU0411 0.34 +0.9
460,566 + DVU0411 0.34 +0.4
460,566 + DVU0411 0.34 +0.8
460,574 - DVU0411 0.34 +2.0
460,589 - DVU0411 0.35 +0.3
460,701 + DVU0411 0.42 +0.6
460,709 - DVU0411 0.42 +0.6
460,764 + DVU0411 0.46 +0.0
460,764 + DVU0411 0.46 +0.6
460,769 + DVU0411 0.46 -1.2
460,876 - DVU0411 0.52 +0.8
460,914 + DVU0411 0.55 +0.5
460,922 - DVU0411 0.55 +0.8
460,924 - DVU0411 0.55 +0.7
460,984 + DVU0411 0.59 -0.9
461,049 - DVU0411 0.63 +1.4
461,132 + DVU0411 0.68 +0.6
461,140 - DVU0411 0.68 +0.9
461,165 + DVU0411 0.70 +0.3
461,361 - DVU0411 0.81 +0.3
461,480 - DVU0411 0.89 +0.6
461,504 + +0.1
461,512 - +0.2
461,521 + +0.6
461,539 - +1.2
461,634 + +0.4
461,816 + DVU0412 0.19 +0.7
461,824 - DVU0412 0.20 -0.6
461,903 + DVU0412 0.32 +1.1
461,965 - DVU0412 0.42 +0.3
462,012 - DVU0412 0.49 -2.4
462,046 + DVU0412 0.54 +0.5
462,046 + DVU0412 0.54 -2.7
462,054 - DVU0412 0.55 -1.9
462,054 - DVU0412 0.55 +0.4
462,054 - DVU0412 0.55 +0.3
462,054 - DVU0412 0.55 -0.9
462,181 - DVU0412 0.74 +0.4
462,239 + DVU0412 0.83 -1.3
462,239 + DVU0412 0.83 +1.3
462,274 + DVU0412 0.88 -0.2
462,329 - +0.6
462,360 + -0.2
462,368 - -0.4
462,591 - trk1 DVU0413 0.13 +0.3
462,599 - trk1 DVU0413 0.14 +0.6
462,599 - trk1 DVU0413 0.14 +0.3
462,599 - trk1 DVU0413 0.14 -0.6
462,609 - trk1 DVU0413 0.15 -1.4
462,609 - trk1 DVU0413 0.15 -0.5
462,653 - trk1 DVU0413 0.18 +0.6

Or see this region's nucleotide sequence