Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0408 and DVU0409 are separated by 222 nucleotides DVU0409 and DVU0410 are separated by 5 nucleotides DVU0410 and DVU0411 are separated by 161 nucleotides
DVU0408: DVU0408 - response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR), at 456,505 to 458,652
DVU0408
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
Position (kb) 459
460 Strain fitness (log2 ratio) -1
0
1
2 at 458.237 kb on + strand, within DVU0408 at 458.252 kb on + strand, within DVU0408 at 458.316 kb on + strand, within DVU0408 at 458.381 kb on + strand, within DVU0408 at 458.383 kb on + strand, within DVU0408 at 458.441 kb on - strand at 458.567 kb on + strand at 458.575 kb on - strand at 458.713 kb on + strand at 458.779 kb on - strand at 458.792 kb on + strand at 458.792 kb on + strand at 458.839 kb on + strand at 458.886 kb on + strand at 458.894 kb on - strand at 458.906 kb on + strand at 458.914 kb on - strand, within DVU0409 at 458.994 kb on - strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410 at 459.658 kb on + strand, within DVU0410 at 459.665 kb on - strand, within DVU0410 at 459.685 kb on - strand, within DVU0410 at 459.688 kb on + strand, within DVU0410 at 459.727 kb on - strand, within DVU0410 at 459.737 kb on + strand, within DVU0410 at 459.934 kb on + strand at 460.029 kb on - strand at 460.118 kb on - strand at 460.133 kb on + strand at 460.136 kb on - strand at 460.154 kb on - strand at 460.176 kb on - strand, within DVU0411 at 460.255 kb on - strand, within DVU0411 at 460.294 kb on - strand, within DVU0411 at 460.299 kb on + strand, within DVU0411 at 460.304 kb on + strand, within DVU0411 at 460.316 kb on + strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.319 kb on - strand, within DVU0411 at 460.321 kb on + strand, within DVU0411 at 460.324 kb on - strand, within DVU0411 at 460.355 kb on - strand, within DVU0411 at 460.423 kb on - strand, within DVU0411 at 460.438 kb on - strand, within DVU0411 at 460.561 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.566 kb on + strand, within DVU0411 at 460.574 kb on - strand, within DVU0411 at 460.589 kb on - strand, within DVU0411 at 460.701 kb on + strand, within DVU0411 at 460.709 kb on - strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.764 kb on + strand, within DVU0411 at 460.769 kb on + strand, within DVU0411
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 458,237 + DVU0408 0.81 -0.0 458,252 + DVU0408 0.81 +0.4 458,316 + DVU0408 0.84 +0.1 458,381 + DVU0408 0.87 +0.6 458,383 + DVU0408 0.87 -0.0 458,441 - +0.4 458,567 + -0.5 458,575 - +0.0 458,713 + -0.1 458,779 - -0.1 458,792 + +0.0 458,792 + -0.3 458,839 + -0.3 458,886 + -0.7 458,894 - -0.2 458,906 + +1.1 458,914 - DVU0409 0.11 -0.7 458,994 - DVU0409 0.34 -0.3 459,177 + DVU0409 0.86 +1.1 459,177 + DVU0409 0.86 -0.8 459,202 - +0.8 459,448 + DVU0410 0.36 -0.8 459,448 + DVU0410 0.36 +0.8 459,482 - DVU0410 0.41 +0.8 459,500 + DVU0410 0.44 +0.3 459,500 + DVU0410 0.44 +0.7 459,500 + DVU0410 0.44 +0.8 459,562 + DVU0410 0.55 +0.5 459,577 + DVU0410 0.57 +0.1 459,580 - DVU0410 0.58 +0.8 459,585 - DVU0410 0.58 +0.7 459,658 + DVU0410 0.70 -0.6 459,665 - DVU0410 0.72 +0.8 459,685 - DVU0410 0.75 +0.4 459,688 + DVU0410 0.75 +1.9 459,727 - DVU0410 0.82 +1.1 459,737 + DVU0410 0.83 +0.8 459,934 + +0.4 460,029 - +0.8 460,118 - +0.1 460,133 + -0.5 460,136 - +0.5 460,154 - +1.8 460,176 - DVU0411 0.11 +0.1 460,255 - DVU0411 0.15 +0.8 460,294 - DVU0411 0.18 +1.3 460,299 + DVU0411 0.18 +0.4 460,304 + DVU0411 0.18 +0.1 460,316 + DVU0411 0.19 +0.6 460,319 - DVU0411 0.19 +0.7 460,319 - DVU0411 0.19 +1.3 460,321 + DVU0411 0.19 +0.2 460,324 - DVU0411 0.19 +2.2 460,355 - DVU0411 0.21 +1.0 460,423 - DVU0411 0.25 +0.7 460,438 - DVU0411 0.26 +0.8 460,561 + DVU0411 0.34 +0.9 460,566 + DVU0411 0.34 +0.4 460,566 + DVU0411 0.34 +0.8 460,574 - DVU0411 0.34 +2.0 460,589 - DVU0411 0.35 +0.3 460,701 + DVU0411 0.42 +0.6 460,709 - DVU0411 0.42 +0.6 460,764 + DVU0411 0.46 +0.0 460,764 + DVU0411 0.46 +0.6 460,769 + DVU0411 0.46 -1.2
Or see this region's nucleotide sequence