Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0375 and DVU0376 are separated by 21 nucleotides DVU0376 and trxB-1 are separated by 3 nucleotides trxB-1 and DVU0378 are separated by 18 nucleotides
DVU0375: DVU0375 - Glu/Leu/Phe/Val dehydrogenase family protein (TIGR), at 425,986 to 427,215
DVU0375
DVU0376: DVU0376 - hypothetical protein (TIGR), at 427,237 to 427,503
DVU0376
DVU0377: trxB-1 - thioredoxin reductase (TIGR), at 427,507 to 428,424
trxB-1
DVU0378: DVU0378 - thioredoxin, putative (TIGR), at 428,443 to 428,757
DVU0378
Position (kb) 427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.297 kb on + strand, within DVU0375 at 426.298 kb on - strand, within DVU0375 at 426.365 kb on - strand, within DVU0375 at 426.452 kb on + strand, within DVU0375 at 426.460 kb on - strand, within DVU0375 at 426.490 kb on - strand, within DVU0375 at 426.529 kb on - strand, within DVU0375 at 426.549 kb on + strand, within DVU0375 at 426.552 kb on - strand, within DVU0375 at 426.605 kb on + strand, within DVU0375 at 426.614 kb on + strand, within DVU0375 at 426.622 kb on - strand, within DVU0375 at 426.678 kb on + strand, within DVU0375 at 426.779 kb on - strand, within DVU0375 at 426.782 kb on + strand, within DVU0375 at 426.783 kb on + strand, within DVU0375 at 426.816 kb on - strand, within DVU0375 at 426.942 kb on - strand, within DVU0375 at 426.946 kb on - strand, within DVU0375 at 426.965 kb on - strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.034 kb on + strand, within DVU0375 at 427.042 kb on - strand, within DVU0375 at 427.047 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.052 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.063 kb on + strand, within DVU0375 at 427.066 kb on - strand, within DVU0375 at 427.115 kb on + strand at 427.257 kb on + strand at 427.359 kb on - strand, within DVU0376 at 427.430 kb on + strand, within DVU0376 at 427.441 kb on + strand, within DVU0376 at 427.502 kb on - strand at 427.504 kb on + strand at 427.546 kb on - strand at 427.553 kb on - strand at 427.645 kb on + strand, within trxB-1 at 427.645 kb on + strand, within trxB-1 at 427.753 kb on + strand, within trxB-1 at 427.785 kb on + strand, within trxB-1 at 427.795 kb on + strand, within trxB-1 at 427.950 kb on - strand, within trxB-1 at 427.951 kb on + strand, within trxB-1 at 428.116 kb on + strand, within trxB-1 at 428.143 kb on - strand, within trxB-1 at 428.210 kb on - strand, within trxB-1 at 428.285 kb on + strand, within trxB-1
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 426,297 + DVU0375 0.25 -0.1 426,298 - DVU0375 0.25 -0.9 426,365 - DVU0375 0.31 -2.2 426,452 + DVU0375 0.38 +1.9 426,460 - DVU0375 0.39 +0.8 426,490 - DVU0375 0.41 -0.3 426,529 - DVU0375 0.44 -0.1 426,549 + DVU0375 0.46 -0.7 426,552 - DVU0375 0.46 -0.0 426,605 + DVU0375 0.50 +0.1 426,614 + DVU0375 0.51 -0.2 426,622 - DVU0375 0.52 -0.6 426,678 + DVU0375 0.56 +0.1 426,779 - DVU0375 0.64 +0.2 426,782 + DVU0375 0.65 +0.2 426,783 + DVU0375 0.65 -0.4 426,816 - DVU0375 0.67 -1.2 426,942 - DVU0375 0.78 -0.6 426,946 - DVU0375 0.78 -0.4 426,965 - DVU0375 0.80 +0.5 427,034 + DVU0375 0.85 -0.2 427,034 + DVU0375 0.85 -0.4 427,042 - DVU0375 0.86 -0.8 427,047 + DVU0375 0.86 -0.2 427,052 + DVU0375 0.87 +0.6 427,052 + DVU0375 0.87 +0.1 427,063 + DVU0375 0.88 -0.2 427,063 + DVU0375 0.88 -0.2 427,066 - DVU0375 0.88 -0.6 427,115 + +0.6 427,257 + -0.1 427,359 - DVU0376 0.46 +0.4 427,430 + DVU0376 0.72 -1.0 427,441 + DVU0376 0.76 -1.2 427,502 - -0.9 427,504 + -0.0 427,546 - -0.1 427,553 - -0.1 427,645 + trxB-1 DVU0377 0.15 -0.7 427,645 + trxB-1 DVU0377 0.15 -1.8 427,753 + trxB-1 DVU0377 0.27 +1.2 427,785 + trxB-1 DVU0377 0.30 -1.2 427,795 + trxB-1 DVU0377 0.31 -0.0 427,950 - trxB-1 DVU0377 0.48 -0.7 427,951 + trxB-1 DVU0377 0.48 +0.8 428,116 + trxB-1 DVU0377 0.66 +0.4 428,143 - trxB-1 DVU0377 0.69 -0.7 428,210 - trxB-1 DVU0377 0.77 -0.3 428,285 + trxB-1 DVU0377 0.85 -0.4
Or see this region's nucleotide sequence