Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0330

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0328 and DVU0330 are separated by 290 nucleotidesDVU0330 and DVU0331 overlap by 1 nucleotides DVU0328: DVU0328 - glycosyl transferase, group 1 family protein (TIGR), at 371,560 to 372,705 DVU0328 DVU0330: DVU0330 - response regulator (TIGR), at 372,996 to 374,234 DVU0330 DVU0331: DVU0331 - sensory box histidine kinase, putative (TIGR), at 374,234 to 377,155 DVU0331 Position (kb) 372 373 374 375Strain fitness (log2 ratio) -2 -1 0 1 2at 372.786 kb on + strandat 372.799 kb on - strandat 372.801 kb on + strandat 372.809 kb on - strandat 372.809 kb on - strandat 372.809 kb on - strandat 372.809 kb on - strandat 372.866 kb on - strandat 372.967 kb on + strandat 372.993 kb on + strandat 373.011 kb on - strandat 373.013 kb on + strandat 373.018 kb on + strandat 373.018 kb on + strandat 373.021 kb on - strandat 373.021 kb on - strandat 373.080 kb on - strandat 373.084 kb on + strandat 373.101 kb on - strandat 373.103 kb on + strandat 373.142 kb on + strand, within DVU0330at 373.184 kb on + strand, within DVU0330at 373.190 kb on + strand, within DVU0330at 373.208 kb on - strand, within DVU0330at 373.208 kb on - strand, within DVU0330at 373.226 kb on - strand, within DVU0330at 373.245 kb on + strand, within DVU0330at 373.254 kb on - strand, within DVU0330at 373.266 kb on - strand, within DVU0330at 373.312 kb on + strand, within DVU0330at 373.312 kb on + strand, within DVU0330at 373.315 kb on - strand, within DVU0330at 373.320 kb on - strand, within DVU0330at 373.386 kb on - strand, within DVU0330at 373.409 kb on + strand, within DVU0330at 373.417 kb on - strand, within DVU0330at 373.465 kb on + strand, within DVU0330at 373.473 kb on - strand, within DVU0330at 373.497 kb on - strand, within DVU0330at 373.505 kb on + strand, within DVU0330at 373.505 kb on + strand, within DVU0330at 373.512 kb on + strand, within DVU0330at 373.579 kb on + strand, within DVU0330at 373.586 kb on + strand, within DVU0330at 373.603 kb on + strand, within DVU0330at 373.606 kb on - strand, within DVU0330at 373.608 kb on + strand, within DVU0330at 373.616 kb on - strand, within DVU0330at 373.646 kb on - strand, within DVU0330at 373.715 kb on + strand, within DVU0330at 373.717 kb on + strand, within DVU0330at 373.723 kb on - strand, within DVU0330at 373.725 kb on - strand, within DVU0330at 373.747 kb on - strand, within DVU0330at 373.760 kb on + strand, within DVU0330at 373.768 kb on - strand, within DVU0330at 373.768 kb on - strand, within DVU0330at 373.810 kb on - strand, within DVU0330at 373.857 kb on + strand, within DVU0330at 373.880 kb on + strand, within DVU0330at 373.979 kb on - strand, within DVU0330at 374.020 kb on + strand, within DVU0330at 374.020 kb on + strand, within DVU0330at 374.057 kb on - strand, within DVU0330at 374.162 kb on - strandat 374.203 kb on - strandat 374.203 kb on - strandat 374.203 kb on - strandat 374.225 kb on - strandat 374.239 kb on - strandat 374.365 kb on + strandat 374.375 kb on - strandat 374.411 kb on + strandat 374.431 kb on - strandat 374.470 kb on - strandat 374.470 kb on - strandat 374.522 kb on + strandat 374.564 kb on - strand, within DVU0331at 374.569 kb on - strand, within DVU0331at 374.570 kb on + strand, within DVU0331at 374.570 kb on + strand, within DVU0331at 374.588 kb on - strand, within DVU0331at 374.599 kb on + strand, within DVU0331at 374.687 kb on + strand, within DVU0331at 374.796 kb on - strand, within DVU0331at 374.838 kb on - strand, within DVU0331at 374.846 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.907 kb on + strand, within DVU0331at 374.909 kb on + strand, within DVU0331at 374.915 kb on - strand, within DVU0331at 374.915 kb on - strand, within DVU0331at 374.931 kb on + strand, within DVU0331at 374.990 kb on + strand, within DVU0331at 375.021 kb on - strand, within DVU0331at 375.093 kb on + strand, within DVU0331at 375.209 kb on + strand, within DVU0331

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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372,786 + -0.8
372,799 - -0.2
372,801 + -0.5
372,809 - +0.8
372,809 - +1.1
372,809 - +0.1
372,809 - -0.5
372,866 - -1.1
372,967 + +0.4
372,993 + +0.2
373,011 - -0.3
373,013 + -0.2
373,018 + +0.7
373,018 + -0.6
373,021 - -0.3
373,021 - -0.6
373,080 - -0.2
373,084 + -0.8
373,101 - +1.8
373,103 + -0.3
373,142 + DVU0330 0.12 -0.1
373,184 + DVU0330 0.15 -0.6
373,190 + DVU0330 0.16 +0.5
373,208 - DVU0330 0.17 -0.8
373,208 - DVU0330 0.17 -0.8
373,226 - DVU0330 0.19 -1.6
373,245 + DVU0330 0.20 -1.3
373,254 - DVU0330 0.21 -0.6
373,266 - DVU0330 0.22 -0.5
373,312 + DVU0330 0.26 -1.4
373,312 + DVU0330 0.26 -1.1
373,315 - DVU0330 0.26 -0.1
373,320 - DVU0330 0.26 -0.7
373,386 - DVU0330 0.31 -0.4
373,409 + DVU0330 0.33 -0.5
373,417 - DVU0330 0.34 -1.4
373,465 + DVU0330 0.38 -1.6
373,473 - DVU0330 0.38 -0.7
373,497 - DVU0330 0.40 -0.3
373,505 + DVU0330 0.41 -0.6
373,505 + DVU0330 0.41 -0.4
373,512 + DVU0330 0.42 -1.8
373,579 + DVU0330 0.47 -0.1
373,586 + DVU0330 0.48 -0.6
373,603 + DVU0330 0.49 +0.4
373,606 - DVU0330 0.49 +1.3
373,608 + DVU0330 0.49 -0.7
373,616 - DVU0330 0.50 -1.2
373,646 - DVU0330 0.52 -0.4
373,715 + DVU0330 0.58 -0.4
373,717 + DVU0330 0.58 -0.5
373,723 - DVU0330 0.59 -0.5
373,725 - DVU0330 0.59 -2.1
373,747 - DVU0330 0.61 -0.7
373,760 + DVU0330 0.62 -0.7
373,768 - DVU0330 0.62 -0.7
373,768 - DVU0330 0.62 +1.1
373,810 - DVU0330 0.66 -0.9
373,857 + DVU0330 0.69 -0.9
373,880 + DVU0330 0.71 -0.4
373,979 - DVU0330 0.79 -0.7
374,020 + DVU0330 0.83 -1.1
374,020 + DVU0330 0.83 -0.1
374,057 - DVU0330 0.86 -1.0
374,162 - +0.8
374,203 - -0.3
374,203 - -0.7
374,203 - +0.1
374,225 - +0.0
374,239 - -0.3
374,365 + -0.3
374,375 - -0.3
374,411 + -0.3
374,431 - +0.1
374,470 - +0.6
374,470 - +1.1
374,522 + -0.2
374,564 - DVU0331 0.11 +0.6
374,569 - DVU0331 0.11 +0.0
374,570 + DVU0331 0.11 -0.1
374,570 + DVU0331 0.11 +0.2
374,588 - DVU0331 0.12 -1.2
374,599 + DVU0331 0.12 +0.0
374,687 + DVU0331 0.16 +0.2
374,796 - DVU0331 0.19 -1.4
374,838 - DVU0331 0.21 -0.2
374,846 + DVU0331 0.21 -0.1
374,907 + DVU0331 0.23 -0.6
374,907 + DVU0331 0.23 -0.1
374,907 + DVU0331 0.23 +0.4
374,909 + DVU0331 0.23 -1.0
374,915 - DVU0331 0.23 -1.5
374,915 - DVU0331 0.23 +0.3
374,931 + DVU0331 0.24 -0.1
374,990 + DVU0331 0.26 -0.4
375,021 - DVU0331 0.27 -0.3
375,093 + DVU0331 0.29 -1.7
375,209 + DVU0331 0.33 +0.2

Or see this region's nucleotide sequence