Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0328 and DVU0330 are separated by 290 nucleotides DVU0330 and DVU0331 overlap by 1 nucleotides
DVU0328: DVU0328 - glycosyl transferase, group 1 family protein (TIGR), at 371,560 to 372,705
DVU0328
DVU0330: DVU0330 - response regulator (TIGR), at 372,996 to 374,234
DVU0330
DVU0331: DVU0331 - sensory box histidine kinase, putative (TIGR), at 374,234 to 377,155
DVU0331
Position (kb)
372
373
374
375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 372.786 kb on + strand at 372.799 kb on - strand at 372.801 kb on + strand at 372.809 kb on - strand at 372.809 kb on - strand at 372.809 kb on - strand at 372.809 kb on - strand at 372.866 kb on - strand at 372.967 kb on + strand at 372.993 kb on + strand at 373.011 kb on - strand at 373.013 kb on + strand at 373.018 kb on + strand at 373.018 kb on + strand at 373.021 kb on - strand at 373.021 kb on - strand at 373.080 kb on - strand at 373.084 kb on + strand at 373.101 kb on - strand at 373.103 kb on + strand at 373.142 kb on + strand, within DVU0330 at 373.184 kb on + strand, within DVU0330 at 373.190 kb on + strand, within DVU0330 at 373.208 kb on - strand, within DVU0330 at 373.208 kb on - strand, within DVU0330 at 373.226 kb on - strand, within DVU0330 at 373.245 kb on + strand, within DVU0330 at 373.254 kb on - strand, within DVU0330 at 373.266 kb on - strand, within DVU0330 at 373.312 kb on + strand, within DVU0330 at 373.312 kb on + strand, within DVU0330 at 373.315 kb on - strand, within DVU0330 at 373.320 kb on - strand, within DVU0330 at 373.386 kb on - strand, within DVU0330 at 373.409 kb on + strand, within DVU0330 at 373.417 kb on - strand, within DVU0330 at 373.465 kb on + strand, within DVU0330 at 373.473 kb on - strand, within DVU0330 at 373.497 kb on - strand, within DVU0330 at 373.505 kb on + strand, within DVU0330 at 373.505 kb on + strand, within DVU0330 at 373.512 kb on + strand, within DVU0330 at 373.579 kb on + strand, within DVU0330 at 373.586 kb on + strand, within DVU0330 at 373.603 kb on + strand, within DVU0330 at 373.606 kb on - strand, within DVU0330 at 373.608 kb on + strand, within DVU0330 at 373.616 kb on - strand, within DVU0330 at 373.646 kb on - strand, within DVU0330 at 373.715 kb on + strand, within DVU0330 at 373.717 kb on + strand, within DVU0330 at 373.723 kb on - strand, within DVU0330 at 373.725 kb on - strand, within DVU0330 at 373.747 kb on - strand, within DVU0330 at 373.760 kb on + strand, within DVU0330 at 373.768 kb on - strand, within DVU0330 at 373.768 kb on - strand, within DVU0330 at 373.810 kb on - strand, within DVU0330 at 373.857 kb on + strand, within DVU0330 at 373.880 kb on + strand, within DVU0330 at 373.979 kb on - strand, within DVU0330 at 374.020 kb on + strand, within DVU0330 at 374.020 kb on + strand, within DVU0330 at 374.057 kb on - strand, within DVU0330 at 374.162 kb on - strand at 374.203 kb on - strand at 374.203 kb on - strand at 374.203 kb on - strand at 374.225 kb on - strand at 374.239 kb on - strand at 374.365 kb on + strand at 374.375 kb on - strand at 374.411 kb on + strand at 374.431 kb on - strand at 374.470 kb on - strand at 374.470 kb on - strand at 374.522 kb on + strand at 374.564 kb on - strand, within DVU0331 at 374.569 kb on - strand, within DVU0331 at 374.570 kb on + strand, within DVU0331 at 374.570 kb on + strand, within DVU0331 at 374.588 kb on - strand, within DVU0331 at 374.599 kb on + strand, within DVU0331 at 374.687 kb on + strand, within DVU0331 at 374.796 kb on - strand, within DVU0331 at 374.838 kb on - strand, within DVU0331 at 374.846 kb on + strand, within DVU0331 at 374.907 kb on + strand, within DVU0331 at 374.907 kb on + strand, within DVU0331 at 374.907 kb on + strand, within DVU0331 at 374.909 kb on + strand, within DVU0331 at 374.915 kb on - strand, within DVU0331 at 374.915 kb on - strand, within DVU0331 at 374.931 kb on + strand, within DVU0331 at 374.990 kb on + strand, within DVU0331 at 375.021 kb on - strand, within DVU0331 at 375.093 kb on + strand, within DVU0331 at 375.209 kb on + strand, within DVU0331
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 372,786 + -0.8 372,799 - -0.2 372,801 + -0.5 372,809 - +0.8 372,809 - +1.1 372,809 - +0.1 372,809 - -0.5 372,866 - -1.1 372,967 + +0.4 372,993 + +0.2 373,011 - -0.3 373,013 + -0.2 373,018 + +0.7 373,018 + -0.6 373,021 - -0.3 373,021 - -0.6 373,080 - -0.2 373,084 + -0.8 373,101 - +1.8 373,103 + -0.3 373,142 + DVU0330 0.12 -0.1 373,184 + DVU0330 0.15 -0.6 373,190 + DVU0330 0.16 +0.5 373,208 - DVU0330 0.17 -0.8 373,208 - DVU0330 0.17 -0.8 373,226 - DVU0330 0.19 -1.6 373,245 + DVU0330 0.20 -1.3 373,254 - DVU0330 0.21 -0.6 373,266 - DVU0330 0.22 -0.5 373,312 + DVU0330 0.26 -1.4 373,312 + DVU0330 0.26 -1.1 373,315 - DVU0330 0.26 -0.1 373,320 - DVU0330 0.26 -0.7 373,386 - DVU0330 0.31 -0.4 373,409 + DVU0330 0.33 -0.5 373,417 - DVU0330 0.34 -1.4 373,465 + DVU0330 0.38 -1.6 373,473 - DVU0330 0.38 -0.7 373,497 - DVU0330 0.40 -0.3 373,505 + DVU0330 0.41 -0.6 373,505 + DVU0330 0.41 -0.4 373,512 + DVU0330 0.42 -1.8 373,579 + DVU0330 0.47 -0.1 373,586 + DVU0330 0.48 -0.6 373,603 + DVU0330 0.49 +0.4 373,606 - DVU0330 0.49 +1.3 373,608 + DVU0330 0.49 -0.7 373,616 - DVU0330 0.50 -1.2 373,646 - DVU0330 0.52 -0.4 373,715 + DVU0330 0.58 -0.4 373,717 + DVU0330 0.58 -0.5 373,723 - DVU0330 0.59 -0.5 373,725 - DVU0330 0.59 -2.1 373,747 - DVU0330 0.61 -0.7 373,760 + DVU0330 0.62 -0.7 373,768 - DVU0330 0.62 -0.7 373,768 - DVU0330 0.62 +1.1 373,810 - DVU0330 0.66 -0.9 373,857 + DVU0330 0.69 -0.9 373,880 + DVU0330 0.71 -0.4 373,979 - DVU0330 0.79 -0.7 374,020 + DVU0330 0.83 -1.1 374,020 + DVU0330 0.83 -0.1 374,057 - DVU0330 0.86 -1.0 374,162 - +0.8 374,203 - -0.3 374,203 - -0.7 374,203 - +0.1 374,225 - +0.0 374,239 - -0.3 374,365 + -0.3 374,375 - -0.3 374,411 + -0.3 374,431 - +0.1 374,470 - +0.6 374,470 - +1.1 374,522 + -0.2 374,564 - DVU0331 0.11 +0.6 374,569 - DVU0331 0.11 +0.0 374,570 + DVU0331 0.11 -0.1 374,570 + DVU0331 0.11 +0.2 374,588 - DVU0331 0.12 -1.2 374,599 + DVU0331 0.12 +0.0 374,687 + DVU0331 0.16 +0.2 374,796 - DVU0331 0.19 -1.4 374,838 - DVU0331 0.21 -0.2 374,846 + DVU0331 0.21 -0.1 374,907 + DVU0331 0.23 -0.6 374,907 + DVU0331 0.23 -0.1 374,907 + DVU0331 0.23 +0.4 374,909 + DVU0331 0.23 -1.0 374,915 - DVU0331 0.23 -1.5 374,915 - DVU0331 0.23 +0.3 374,931 + DVU0331 0.24 -0.1 374,990 + DVU0331 0.26 -0.4 375,021 - DVU0331 0.27 -0.3 375,093 + DVU0331 0.29 -1.7 375,209 + DVU0331 0.33 +0.2
Or see this region's nucleotide sequence