Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0318

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflgB and DVU0318 are separated by 638 nucleotidesDVU0318 and DVU0319 are separated by 471 nucleotides DVU0316: flgB - flagellar basal-body rod protein FlgB (TIGR), at 360,401 to 360,811 flgB DVU0318: DVU0318 - TPR domain protein (TIGR), at 361,450 to 362,013 DVU0318 DVU0319: DVU0319 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 362,485 to 363,510 DVU0319 Position (kb) 361 362 363Strain fitness (log2 ratio) -1 0 1at 360.486 kb on - strand, within flgBat 360.525 kb on - strand, within flgBat 360.650 kb on + strand, within flgBat 360.652 kb on - strand, within flgBat 360.834 kb on + strandat 360.979 kb on + strandat 361.005 kb on + strandat 361.011 kb on + strandat 361.013 kb on - strandat 361.135 kb on + strandat 361.145 kb on + strandat 361.210 kb on + strandat 361.218 kb on - strandat 361.416 kb on + strandat 361.417 kb on + strandat 361.497 kb on - strandat 361.718 kb on - strand, within DVU0318at 361.771 kb on - strand, within DVU0318at 361.891 kb on + strand, within DVU0318at 361.950 kb on - strand, within DVU0318at 361.998 kb on - strandat 362.000 kb on - strandat 362.145 kb on + strandat 362.146 kb on + strandat 362.167 kb on + strandat 362.169 kb on - strandat 362.248 kb on + strandat 362.256 kb on - strandat 362.385 kb on + strandat 362.385 kb on + strandat 362.461 kb on - strandat 362.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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360,486 - flgB DVU0316 0.21 +0.6
360,525 - flgB DVU0316 0.30 +0.5
360,650 + flgB DVU0316 0.61 +0.7
360,652 - flgB DVU0316 0.61 +1.3
360,834 + +0.8
360,979 + -0.6
361,005 + -0.2
361,011 + -0.3
361,013 - -0.2
361,135 + -1.2
361,145 + +0.7
361,210 + -0.0
361,218 - +0.2
361,416 + -0.0
361,417 + -0.4
361,497 - +0.6
361,718 - DVU0318 0.48 +0.3
361,771 - DVU0318 0.57 +0.9
361,891 + DVU0318 0.78 +0.4
361,950 - DVU0318 0.89 +1.1
361,998 - +0.6
362,000 - -0.5
362,145 + +0.2
362,146 + -0.6
362,167 + -1.5
362,169 - -0.1
362,248 + +0.3
362,256 - +0.6
362,385 + +0.1
362,385 + -0.8
362,461 - -0.2
362,466 + +0.5

Or see this region's nucleotide sequence