Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0311 and fliG overlap by 14 nucleotides fliG and fliF overlap by 32 nucleotides fliF and fliE are separated by 51 nucleotides fliE and flgC are separated by 14 nucleotides flgC and flgB overlap by 1 nucleotides
DVU0311: DVU0311 - flagellar assembly protein FliH, putative (TIGR), at 356,222 to 356,974
DVU0311
DVU0312: fliG - flagellar motor switch protein FliG (TIGR), at 356,961 to 357,977
fliG
DVU0313: fliF - flagellar M-ring protein FliF (TIGR), at 357,946 to 359,562
fliF
DVU0314: fliE - flagellar basal body component FliE (TIGR), at 359,614 to 359,949
fliE
DVU0315: flgC - flagellar basal-body rod protein FlgC (TIGR), at 359,964 to 360,401
flgC
DVU0316: flgB - flagellar basal-body rod protein FlgB (TIGR), at 360,401 to 360,811
flgB
Position (kb) 357
358
359
360 Strain fitness (log2 ratio) -1
0
1
2 at 357.003 kb on + strand at 357.003 kb on + strand at 357.045 kb on - strand at 357.047 kb on - strand at 357.060 kb on - strand at 357.069 kb on - strand, within fliG at 357.181 kb on - strand, within fliG at 357.202 kb on + strand, within fliG at 357.202 kb on + strand, within fliG at 357.210 kb on - strand, within fliG at 357.366 kb on + strand, within fliG at 357.417 kb on - strand, within fliG at 357.466 kb on + strand, within fliG at 357.466 kb on + strand, within fliG at 357.601 kb on + strand, within fliG at 357.652 kb on + strand, within fliG at 357.664 kb on + strand, within fliG at 357.682 kb on - strand, within fliG at 357.710 kb on - strand, within fliG at 357.763 kb on - strand, within fliG at 357.799 kb on + strand, within fliG at 357.802 kb on - strand, within fliG at 357.802 kb on - strand, within fliG at 357.802 kb on - strand, within fliG at 357.864 kb on - strand, within fliG at 357.885 kb on + strand at 357.943 kb on + strand at 357.943 kb on + strand at 357.943 kb on - strand at 357.951 kb on - strand at 358.015 kb on - strand at 358.033 kb on + strand at 358.046 kb on + strand at 358.054 kb on - strand at 358.090 kb on - strand at 358.148 kb on - strand, within fliF at 358.188 kb on - strand, within fliF at 358.202 kb on - strand, within fliF at 358.238 kb on + strand, within fliF at 358.238 kb on + strand, within fliF at 358.274 kb on - strand, within fliF at 358.334 kb on + strand, within fliF at 358.341 kb on + strand, within fliF at 358.374 kb on - strand, within fliF at 358.435 kb on + strand, within fliF at 358.443 kb on - strand, within fliF at 358.443 kb on - strand, within fliF at 358.458 kb on + strand, within fliF at 358.504 kb on - strand, within fliF at 358.533 kb on - strand, within fliF at 358.621 kb on - strand, within fliF at 358.640 kb on + strand, within fliF at 358.683 kb on + strand, within fliF at 358.691 kb on - strand, within fliF at 358.765 kb on - strand, within fliF at 358.772 kb on - strand, within fliF at 358.796 kb on + strand, within fliF at 358.796 kb on + strand, within fliF at 358.804 kb on - strand, within fliF at 358.804 kb on - strand, within fliF at 358.967 kb on - strand, within fliF at 358.986 kb on - strand, within fliF at 359.066 kb on + strand, within fliF at 359.105 kb on - strand, within fliF at 359.111 kb on - strand, within fliF at 359.212 kb on - strand, within fliF at 359.238 kb on - strand, within fliF at 359.290 kb on - strand, within fliF at 359.345 kb on + strand, within fliF at 359.414 kb on - strand at 359.584 kb on + strand at 359.587 kb on - strand at 359.654 kb on + strand, within fliE at 359.667 kb on + strand, within fliE at 359.674 kb on + strand, within fliE at 359.685 kb on + strand, within fliE at 359.685 kb on + strand, within fliE at 359.708 kb on - strand, within fliE at 359.756 kb on + strand, within fliE at 359.915 kb on + strand, within fliE at 359.999 kb on - strand at 360.016 kb on + strand, within flgC at 360.024 kb on - strand, within flgC at 360.031 kb on - strand, within flgC at 360.057 kb on - strand, within flgC at 360.084 kb on - strand, within flgC at 360.150 kb on - strand, within flgC at 360.187 kb on - strand, within flgC at 360.189 kb on + strand, within flgC at 360.202 kb on - strand, within flgC at 360.219 kb on - strand, within flgC at 360.219 kb on - strand, within flgC at 360.285 kb on + strand, within flgC at 360.304 kb on + strand, within flgC at 360.304 kb on + strand, within flgC at 360.312 kb on - strand, within flgC at 360.334 kb on + strand, within flgC at 360.396 kb on - strand at 360.486 kb on - strand, within flgB at 360.525 kb on - strand, within flgB
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 357,003 + +1.3 357,003 + +1.2 357,045 - +1.0 357,047 - +1.1 357,060 - +1.2 357,069 - fliG DVU0312 0.11 +1.2 357,181 - fliG DVU0312 0.22 +0.8 357,202 + fliG DVU0312 0.24 +0.9 357,202 + fliG DVU0312 0.24 +1.2 357,210 - fliG DVU0312 0.24 +0.8 357,366 + fliG DVU0312 0.40 +0.8 357,417 - fliG DVU0312 0.45 +0.7 357,466 + fliG DVU0312 0.50 +0.9 357,466 + fliG DVU0312 0.50 +0.9 357,601 + fliG DVU0312 0.63 +1.2 357,652 + fliG DVU0312 0.68 +0.6 357,664 + fliG DVU0312 0.69 +0.6 357,682 - fliG DVU0312 0.71 +1.1 357,710 - fliG DVU0312 0.74 +1.5 357,763 - fliG DVU0312 0.79 +1.2 357,799 + fliG DVU0312 0.82 +1.0 357,802 - fliG DVU0312 0.83 +1.3 357,802 - fliG DVU0312 0.83 +1.2 357,802 - fliG DVU0312 0.83 +1.8 357,864 - fliG DVU0312 0.89 +1.4 357,885 + +0.9 357,943 + +1.0 357,943 + +1.3 357,943 - +1.8 357,951 - +0.7 358,015 - +1.5 358,033 + +0.8 358,046 + +1.2 358,054 - +1.0 358,090 - +0.5 358,148 - fliF DVU0313 0.12 +0.9 358,188 - fliF DVU0313 0.15 +1.0 358,202 - fliF DVU0313 0.16 +0.9 358,238 + fliF DVU0313 0.18 +1.2 358,238 + fliF DVU0313 0.18 +0.9 358,274 - fliF DVU0313 0.20 -0.8 358,334 + fliF DVU0313 0.24 +1.4 358,341 + fliF DVU0313 0.24 +1.2 358,374 - fliF DVU0313 0.26 +2.2 358,435 + fliF DVU0313 0.30 +1.6 358,443 - fliF DVU0313 0.31 +1.1 358,443 - fliF DVU0313 0.31 +1.6 358,458 + fliF DVU0313 0.32 +1.3 358,504 - fliF DVU0313 0.35 +1.1 358,533 - fliF DVU0313 0.36 +1.1 358,621 - fliF DVU0313 0.42 +0.6 358,640 + fliF DVU0313 0.43 +1.2 358,683 + fliF DVU0313 0.46 +1.0 358,691 - fliF DVU0313 0.46 +1.1 358,765 - fliF DVU0313 0.51 +1.0 358,772 - fliF DVU0313 0.51 +1.4 358,796 + fliF DVU0313 0.53 +1.0 358,796 + fliF DVU0313 0.53 -1.2 358,804 - fliF DVU0313 0.53 +1.0 358,804 - fliF DVU0313 0.53 +1.2 358,967 - fliF DVU0313 0.63 -0.7 358,986 - fliF DVU0313 0.64 +1.5 359,066 + fliF DVU0313 0.69 +0.3 359,105 - fliF DVU0313 0.72 +1.1 359,111 - fliF DVU0313 0.72 +1.1 359,212 - fliF DVU0313 0.78 +0.0 359,238 - fliF DVU0313 0.80 +1.7 359,290 - fliF DVU0313 0.83 +1.2 359,345 + fliF DVU0313 0.87 +1.3 359,414 - +1.4 359,584 + +0.4 359,587 - -1.2 359,654 + fliE DVU0314 0.12 +1.0 359,667 + fliE DVU0314 0.16 +1.4 359,674 + fliE DVU0314 0.18 +0.9 359,685 + fliE DVU0314 0.21 +0.3 359,685 + fliE DVU0314 0.21 +0.7 359,708 - fliE DVU0314 0.28 +1.3 359,756 + fliE DVU0314 0.42 +1.5 359,915 + fliE DVU0314 0.90 +1.2 359,999 - +0.8 360,016 + flgC DVU0315 0.12 +1.3 360,024 - flgC DVU0315 0.14 -1.5 360,031 - flgC DVU0315 0.15 +1.6 360,057 - flgC DVU0315 0.21 +1.6 360,084 - flgC DVU0315 0.27 +0.9 360,150 - flgC DVU0315 0.42 +1.3 360,187 - flgC DVU0315 0.51 +1.5 360,189 + flgC DVU0315 0.51 +1.2 360,202 - flgC DVU0315 0.54 +1.2 360,219 - flgC DVU0315 0.58 +1.2 360,219 - flgC DVU0315 0.58 +1.3 360,285 + flgC DVU0315 0.73 +1.2 360,304 + flgC DVU0315 0.78 +0.9 360,304 + flgC DVU0315 0.78 +0.9 360,312 - flgC DVU0315 0.79 +1.1 360,334 + flgC DVU0315 0.84 +1.3 360,396 - +0.9 360,486 - flgB DVU0316 0.21 +0.6 360,525 - flgB DVU0316 0.30 +0.5
Or see this region's nucleotide sequence