Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0200 and DVU0201 are separated by 8 nucleotides DVU0201 and DVU0202 are separated by 2 nucleotides DVU0202 and DVU0203 are separated by 20 nucleotides DVU0203 and DVU0204 are separated by 17 nucleotides DVU0204 and DVU0205 overlap by 8 nucleotides DVU0205 and DVU0206 are separated by 2 nucleotides
DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002
DVU0200
DVU0201: DVU0201 - hypothetical protein (TIGR), at 247,011 to 247,331
DVU0201
DVU0202: DVU0202 - holin (TIGR), at 247,334 to 247,822
DVU0202
DVU0203: DVU0203 - conserved hypothetical protein (TIGR), at 247,843 to 248,391
DVU0203
DVU0204: DVU0204 - lipoprotein, putative (TIGR), at 248,409 to 248,819
DVU0204
DVU0205: DVU0205 - hypothetical protein (TIGR), at 248,812 to 248,979
DVU0205
DVU0206: DVU0206 - hypothetical protein (TIGR), at 248,982 to 249,575
DVU0206
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1 at 247.045 kb on - strand, within DVU0201 at 247.045 kb on - strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.057 kb on + strand, within DVU0201 at 247.059 kb on + strand, within DVU0201 at 247.084 kb on - strand, within DVU0201 at 247.249 kb on - strand, within DVU0201 at 247.362 kb on - strand at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.499 kb on + strand, within DVU0202 at 247.925 kb on + strand, within DVU0203 at 247.925 kb on + strand, within DVU0203 at 247.925 kb on + strand, within DVU0203 at 247.967 kb on - strand, within DVU0203 at 247.967 kb on - strand, within DVU0203 at 248.619 kb on + strand, within DVU0204 at 248.641 kb on + strand, within DVU0204 at 248.774 kb on + strand, within DVU0204 at 248.900 kb on - strand, within DVU0205 at 248.900 kb on - strand, within DVU0205 at 248.973 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 247,045 - DVU0201 0.11 +0.1 247,045 - DVU0201 0.11 -0.1 247,057 + DVU0201 0.14 +0.0 247,057 + DVU0201 0.14 +0.0 247,057 + DVU0201 0.14 -1.6 247,059 + DVU0201 0.15 -0.2 247,084 - DVU0201 0.23 -2.4 247,249 - DVU0201 0.74 -0.3 247,362 - -0.6 247,499 + DVU0202 0.34 -0.2 247,499 + DVU0202 0.34 +0.1 247,499 + DVU0202 0.34 +0.2 247,499 + DVU0202 0.34 -0.4 247,925 + DVU0203 0.15 -0.5 247,925 + DVU0203 0.15 -1.1 247,925 + DVU0203 0.15 -0.5 247,967 - DVU0203 0.23 -0.0 247,967 - DVU0203 0.23 -0.4 248,619 + DVU0204 0.51 -0.7 248,641 + DVU0204 0.56 -0.4 248,774 + DVU0204 0.89 -0.2 248,900 - DVU0205 0.52 -0.0 248,900 - DVU0205 0.52 -0.1 248,973 + -0.3
Or see this region's nucleotide sequence