Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0113
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
146,147 | - | phrB | DVU0112 | 0.77 | +1.4 |
146,156 | + | phrB | DVU0112 | 0.78 | +0.0 |
146,172 | - | phrB | DVU0112 | 0.79 | -0.1 |
146,308 | + | phrB | DVU0112 | 0.88 | -0.1 |
146,314 | - | phrB | DVU0112 | 0.89 | +0.6 |
146,316 | - | phrB | DVU0112 | 0.89 | +0.0 |
146,316 | - | phrB | DVU0112 | 0.89 | +0.1 |
146,338 | + | +0.2 | |||
146,346 | - | -1.1 | |||
146,362 | + | -0.3 | |||
146,362 | + | -0.0 | |||
146,364 | + | -0.4 | |||
146,372 | - | -0.0 | |||
146,387 | - | -0.1 | |||
146,506 | + | +0.2 | |||
146,542 | - | -0.6 | |||
146,547 | - | +0.2 | |||
146,563 | - | -0.3 | |||
146,575 | - | -0.2 | |||
146,612 | + | -0.6 | |||
146,627 | + | +0.0 | |||
146,627 | + | +0.4 | |||
146,652 | + | +0.0 | |||
146,660 | - | +0.5 | |||
146,704 | - | -0.2 | |||
146,704 | - | -0.0 | |||
146,708 | + | +0.0 | |||
146,739 | - | -0.5 | |||
146,796 | - | -0.1 | |||
146,881 | - | -0.0 | |||
146,882 | + | +0.1 | |||
146,883 | + | +0.9 | |||
146,912 | + | +0.4 | |||
146,912 | + | -0.2 | |||
146,912 | + | +0.1 | |||
146,920 | - | -0.4 | |||
146,939 | + | +0.2 | |||
146,939 | + | +0.5 | |||
146,947 | - | -0.8 | |||
146,948 | + | +0.1 | |||
146,956 | - | -0.1 | |||
146,971 | + | -0.4 | |||
146,971 | + | -0.4 | |||
147,098 | - | +0.1 | |||
147,215 | - | hisI | DVU0113 | 0.26 | -3.5 |
147,298 | - | hisI | DVU0113 | 0.48 | -3.0 |
147,304 | + | hisI | DVU0113 | 0.49 | +0.7 |
147,468 | - | -0.8 | |||
147,483 | - | -2.2 | |||
147,517 | - | -0.4 | |||
147,527 | + | -2.8 | |||
147,535 | - | -1.8 | |||
147,560 | - | -2.3 | |||
147,649 | - | hisG | DVU0114 | 0.18 | -2.1 |
147,680 | - | hisG | DVU0114 | 0.21 | -2.1 |
147,760 | + | hisG | DVU0114 | 0.30 | -0.8 |
147,821 | + | hisG | DVU0114 | 0.37 | -1.0 |
147,821 | + | hisG | DVU0114 | 0.37 | -0.9 |
147,828 | - | hisG | DVU0114 | 0.38 | -0.9 |
147,829 | - | hisG | DVU0114 | 0.38 | -2.6 |
147,829 | - | hisG | DVU0114 | 0.38 | -1.2 |
147,877 | - | hisG | DVU0114 | 0.43 | -1.4 |
147,894 | - | hisG | DVU0114 | 0.45 | -2.2 |
147,897 | - | hisG | DVU0114 | 0.46 | -0.9 |
147,946 | + | hisG | DVU0114 | 0.51 | -1.0 |
148,020 | - | hisG | DVU0114 | 0.60 | +1.7 |
148,071 | + | hisG | DVU0114 | 0.65 | -0.9 |
148,124 | - | hisG | DVU0114 | 0.71 | +0.1 |
148,172 | - | hisG | DVU0114 | 0.77 | -1.6 |
148,221 | + | hisG | DVU0114 | 0.82 | -0.8 |
148,280 | + | hisG | DVU0114 | 0.89 | -0.5 |
148,311 | + | -0.6 | |||
148,327 | + | -0.3 | |||
148,341 | - | -1.8 | |||
148,355 | + | -2.3 | |||
148,355 | + | -1.4 | |||
148,385 | + | +0.1 | |||
148,471 | + | -0.3 | |||
148,495 | - | -2.6 |
Or see this region's nucleotide sequence