Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0043

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0042 and fliQ are separated by 239 nucleotidesfliQ and fliP are separated by 16 nucleotidesfliP and DVU0045 are separated by 28 nucleotides DVU0042: DVU0042 - RNA methyltransferase, TrmH family, group 3 (TIGR), at 49,565 to 50,314 DVU0042 DVU0043: fliQ - flagellar biosynthetic protein FliQ (TIGR), at 50,554 to 50,823 fliQ DVU0044: fliP - flagellar biosynthetic protein fliP (TIGR), at 50,840 to 51,547 fliP DVU0045: DVU0045 - flagellar biosynthesis protein, FliO, putative (TIGR), at 51,576 to 52,097 DVU0045 Position (kb) 50 51Strain fitness (log2 ratio) -1 0 1at 49.594 kb on + strandat 49.594 kb on + strandat 49.594 kb on + strandat 49.594 kb on + strandat 49.646 kb on - strand, within DVU0042at 49.699 kb on + strand, within DVU0042at 49.761 kb on - strand, within DVU0042at 49.761 kb on - strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.769 kb on + strand, within DVU0042at 49.778 kb on + strand, within DVU0042at 49.778 kb on + strand, within DVU0042at 49.782 kb on - strand, within DVU0042at 49.874 kb on - strand, within DVU0042at 49.874 kb on - strand, within DVU0042at 49.877 kb on + strand, within DVU0042at 49.930 kb on - strand, within DVU0042at 49.932 kb on + strand, within DVU0042at 49.987 kb on - strand, within DVU0042at 50.057 kb on - strand, within DVU0042at 50.139 kb on - strand, within DVU0042at 50.175 kb on - strand, within DVU0042at 50.189 kb on - strand, within DVU0042at 50.200 kb on + strand, within DVU0042at 50.220 kb on + strand, within DVU0042at 50.220 kb on + strand, within DVU0042at 50.220 kb on + strand, within DVU0042at 50.220 kb on + strand, within DVU0042at 50.268 kb on - strandat 50.511 kb on + strandat 50.513 kb on + strandat 50.513 kb on + strandat 50.513 kb on + strandat 50.521 kb on - strandat 50.542 kb on - strandat 50.592 kb on + strand, within fliQat 50.599 kb on - strand, within fliQat 50.606 kb on + strand, within fliQat 50.661 kb on + strand, within fliQat 50.770 kb on - strand, within fliQat 50.770 kb on - strand, within fliQat 50.778 kb on + strand, within fliQat 50.878 kb on + strandat 50.952 kb on - strand, within fliPat 50.986 kb on + strand, within fliPat 51.104 kb on - strand, within fliPat 51.220 kb on - strand, within fliPat 51.241 kb on - strand, within fliPat 51.243 kb on - strand, within fliPat 51.321 kb on - strand, within fliPat 51.390 kb on - strand, within fliPat 51.410 kb on + strand, within fliPat 51.467 kb on - strand, within fliPat 51.527 kb on - strandat 51.542 kb on - strandat 51.565 kb on + strandat 51.619 kb on + strandat 51.619 kb on - strandat 51.686 kb on + strand, within DVU0045at 51.694 kb on - strand, within DVU0045at 51.702 kb on + strand, within DVU0045

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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49,594 + -0.3
49,594 + -0.5
49,594 + +0.5
49,594 + +0.4
49,646 - DVU0042 0.11 -0.3
49,699 + DVU0042 0.18 +0.1
49,761 - DVU0042 0.26 +0.3
49,761 - DVU0042 0.26 -0.4
49,769 + DVU0042 0.27 -0.1
49,769 + DVU0042 0.27 -0.0
49,769 + DVU0042 0.27 +0.4
49,778 + DVU0042 0.28 -0.2
49,778 + DVU0042 0.28 +0.0
49,782 - DVU0042 0.29 -0.5
49,874 - DVU0042 0.41 -0.0
49,874 - DVU0042 0.41 +0.1
49,877 + DVU0042 0.42 -0.3
49,930 - DVU0042 0.49 +0.5
49,932 + DVU0042 0.49 +1.0
49,987 - DVU0042 0.56 +1.3
50,057 - DVU0042 0.66 +0.0
50,139 - DVU0042 0.77 -0.3
50,175 - DVU0042 0.81 -0.5
50,189 - DVU0042 0.83 -0.8
50,200 + DVU0042 0.85 -0.5
50,220 + DVU0042 0.87 -0.2
50,220 + DVU0042 0.87 -0.1
50,220 + DVU0042 0.87 +0.2
50,220 + DVU0042 0.87 -0.4
50,268 - -0.5
50,511 + -0.1
50,513 + -0.2
50,513 + +0.0
50,513 + -0.3
50,521 - +0.4
50,542 - -0.7
50,592 + fliQ DVU0043 0.14 +0.4
50,599 - fliQ DVU0043 0.17 +1.1
50,606 + fliQ DVU0043 0.19 +0.7
50,661 + fliQ DVU0043 0.40 +1.2
50,770 - fliQ DVU0043 0.80 +1.6
50,770 - fliQ DVU0043 0.80 +1.1
50,778 + fliQ DVU0043 0.83 +1.2
50,878 + +1.4
50,952 - fliP DVU0044 0.16 +1.0
50,986 + fliP DVU0044 0.21 +1.5
51,104 - fliP DVU0044 0.37 +0.9
51,220 - fliP DVU0044 0.54 +1.0
51,241 - fliP DVU0044 0.57 +1.2
51,243 - fliP DVU0044 0.57 +1.3
51,321 - fliP DVU0044 0.68 +1.2
51,390 - fliP DVU0044 0.78 +1.1
51,410 + fliP DVU0044 0.81 +1.3
51,467 - fliP DVU0044 0.89 +1.2
51,527 - +1.3
51,542 - +1.0
51,565 + +0.5
51,619 + +1.6
51,619 - +1.0
51,686 + DVU0045 0.21 +1.3
51,694 - DVU0045 0.23 +1.3
51,702 + DVU0045 0.24 +1.4

Or see this region's nucleotide sequence