Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3274 and DVU3275 overlap by 4 nucleotides DVU3275 and DVU3276 are separated by 113 nucleotides DVU3276 and DVU3277 are separated by 82 nucleotides DVU3277 and htrA are separated by 0 nucleotides
DVU3274: DVU3274 - hypothetical protein (TIGR), at 3,451,228 to 3,451,896
DVU3274
DVU3275: DVU3275 - hypothetical protein (TIGR), at 3,451,893 to 3,452,033
DVU3275
DVU3276: DVU3276 - ferredoxin I (TIGR), at 3,452,147 to 3,452,335
DVU3276
DVU3277: DVU3277 - hypothetical protein (TIGR), at 3,452,418 to 3,452,516
DVU3277
DVU3278: htrA - peptidase/PDZ domain protein (TIGR), at 3,452,517 to 3,454,073
htrA
Position (kb)
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3452.052 kb on - strand at 3452.067 kb on + strand at 3452.442 kb on + strand, within DVU3277 at 3452.449 kb on - strand, within DVU3277 at 3452.508 kb on - strand at 3452.589 kb on - strand at 3452.618 kb on + strand at 3452.642 kb on + strand at 3452.665 kb on - strand at 3452.721 kb on - strand, within htrA at 3452.752 kb on + strand, within htrA at 3452.752 kb on + strand, within htrA at 3452.752 kb on + strand, within htrA at 3452.752 kb on + strand, within htrA at 3452.760 kb on - strand, within htrA at 3452.779 kb on + strand, within htrA at 3452.787 kb on - strand, within htrA at 3452.869 kb on + strand, within htrA at 3452.912 kb on + strand, within htrA at 3452.956 kb on - strand, within htrA at 3452.980 kb on + strand, within htrA at 3452.988 kb on - strand, within htrA at 3452.995 kb on - strand, within htrA at 3453.087 kb on - strand, within htrA at 3453.087 kb on - strand, within htrA at 3453.087 kb on - strand, within htrA at 3453.087 kb on - strand, within htrA at 3453.173 kb on - strand, within htrA at 3453.188 kb on - strand, within htrA at 3453.257 kb on + strand, within htrA at 3453.261 kb on - strand, within htrA at 3453.282 kb on - strand, within htrA at 3453.324 kb on + strand, within htrA at 3453.446 kb on - strand, within htrA at 3453.461 kb on - strand, within htrA
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 3,452,052 - -0.1 3,452,067 + -0.7 3,452,442 + DVU3277 0.24 -0.4 3,452,449 - DVU3277 0.31 -1.4 3,452,508 - -0.5 3,452,589 - +1.9 3,452,618 + +0.1 3,452,642 + -1.1 3,452,665 - -0.2 3,452,721 - htrA DVU3278 0.13 +0.1 3,452,752 + htrA DVU3278 0.15 +0.1 3,452,752 + htrA DVU3278 0.15 +1.0 3,452,752 + htrA DVU3278 0.15 -0.4 3,452,752 + htrA DVU3278 0.15 -0.3 3,452,760 - htrA DVU3278 0.16 -0.1 3,452,779 + htrA DVU3278 0.17 +1.0 3,452,787 - htrA DVU3278 0.17 +1.4 3,452,869 + htrA DVU3278 0.23 -0.6 3,452,912 + htrA DVU3278 0.25 -2.1 3,452,956 - htrA DVU3278 0.28 -0.1 3,452,980 + htrA DVU3278 0.30 -0.6 3,452,988 - htrA DVU3278 0.30 +0.0 3,452,995 - htrA DVU3278 0.31 -0.6 3,453,087 - htrA DVU3278 0.37 -0.1 3,453,087 - htrA DVU3278 0.37 +0.1 3,453,087 - htrA DVU3278 0.37 -0.3 3,453,087 - htrA DVU3278 0.37 -0.7 3,453,173 - htrA DVU3278 0.42 +0.3 3,453,188 - htrA DVU3278 0.43 -0.1 3,453,257 + htrA DVU3278 0.48 +0.2 3,453,261 - htrA DVU3278 0.48 +0.2 3,453,282 - htrA DVU3278 0.49 -0.4 3,453,324 + htrA DVU3278 0.52 +0.4 3,453,446 - htrA DVU3278 0.60 -0.1 3,453,461 - htrA DVU3278 0.61 +0.4
Or see this region's nucleotide sequence