Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3216

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/5-30 mM)
3,382,336	-		DVU3214	0.77	+0.9
3,382,336	-		DVU3214	0.77	+0.4
3,382,454	-		DVU3214	0.82	-0.7
3,382,454	-		DVU3214	0.82	-0.6
3,382,560	+		DVU3214	0.86	+0.1
3,382,574	+		DVU3214	0.86	-0.5
3,382,649	-		DVU3214	0.89	-1.6
3,382,649	-		DVU3214	0.89	+0.4
3,382,806	-				-0.3
3,382,810	+				+0.0
3,382,865	+				-0.5
3,382,883	-				-1.5
3,382,907	+				-0.7
3,382,939	-				+0.1
3,382,939	-				-0.4
3,383,103	+	drrA	DVU3215	0.41	+0.0
3,383,116	+	drrA	DVU3215	0.45	-0.8
3,383,242	-	drrA	DVU3215	0.79	+1.0
3,383,405	+				-0.3
3,383,415	+				+0.1
3,383,482	+				-0.8
3,383,482	+				-0.9
3,383,490	-				+0.1
3,383,508	+	cckA	DVU3216	0.10	-0.1
3,383,524	-	cckA	DVU3216	0.11	-0.6
3,383,560	+	cckA	DVU3216	0.13	-1.1
3,383,592	+	cckA	DVU3216	0.15	+0.3
3,383,600	-	cckA	DVU3216	0.16	-0.8
3,383,600	-	cckA	DVU3216	0.16	-1.1
3,383,600	-	cckA	DVU3216	0.16	-0.6
3,383,600	-	cckA	DVU3216	0.16	-0.0
3,383,677	+	cckA	DVU3216	0.20	-0.6
3,383,818	+	cckA	DVU3216	0.28	-0.7
3,383,835	+	cckA	DVU3216	0.29	-0.8
3,383,884	-	cckA	DVU3216	0.32	-0.2
3,383,884	-	cckA	DVU3216	0.32	-1.3
3,383,884	-	cckA	DVU3216	0.32	-1.4
3,383,917	+	cckA	DVU3216	0.34	-0.4
3,383,928	-	cckA	DVU3216	0.35	-0.9
3,384,116	+	cckA	DVU3216	0.46	-0.1
3,384,116	+	cckA	DVU3216	0.46	-0.7
3,384,155	+	cckA	DVU3216	0.48	-0.5
3,384,281	+	cckA	DVU3216	0.56	-0.8
3,384,312	+	cckA	DVU3216	0.58	-0.5
3,384,322	+	cckA	DVU3216	0.58	-1.2
3,384,330	-	cckA	DVU3216	0.59	-0.5
3,384,408	+	cckA	DVU3216	0.63	+0.1
3,384,433	-	cckA	DVU3216	0.65	-0.6
3,384,480	+	cckA	DVU3216	0.67	-0.4
3,384,521	+	cckA	DVU3216	0.70	-0.8
3,384,529	-	cckA	DVU3216	0.70	-1.3
3,384,529	-	cckA	DVU3216	0.70	-0.3
3,384,529	-	cckA	DVU3216	0.70	-0.2
3,384,536	+	cckA	DVU3216	0.71	+0.3
3,384,683	-	cckA	DVU3216	0.79	-0.8
3,384,850	+	cckA	DVU3216	0.89	-1.9
3,384,860	-	cckA	DVU3216	0.90	-0.9
3,384,911	-				+0.8
3,385,057	-				+0.7
3,385,199	-				+0.0
3,385,213	-				+1.2
3,385,239	+				-0.2
3,385,243	-				-0.1
3,385,249	+				-0.2
3,385,249	+				+1.4
3,385,257	-				-0.2
3,385,257	-				-1.3
3,385,257	-				-1.9
3,385,257	-				+1.0
3,385,257	-				-0.4
3,385,257	-				-0.3
3,385,257	-				+0.2
3,385,288	+				-0.0
3,385,371	-				+0.4
3,385,443	+				-0.7
3,385,461	-				-0.9
3,385,520	+				-0.3
3,385,534	+				-0.1
3,385,534	+				-0.3
3,385,551	+				+0.4
3,385,716	+				+0.2
3,385,724	-				-0.7
3,385,776	+		DVU3217	0.14	-0.2
3,385,826	-		DVU3217	0.25	-0.4
3,385,874	-		DVU3217	0.36	+0.1
3,385,921	+		DVU3217	0.47	-0.8
3,385,921	-		DVU3217	0.47	+0.3
3,385,956	-		DVU3217	0.55	+0.5
3,385,987	+		DVU3217	0.63	+0.4
3,385,995	-		DVU3217	0.65	-0.6