Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3022
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
3,137,527 | - | DVU3021 | 0.32 | -0.1 | |
3,137,550 | - | DVU3021 | 0.34 | +0.4 | |
3,137,593 | + | DVU3021 | 0.37 | -0.3 | |
3,137,632 | - | DVU3021 | 0.40 | +0.7 | |
3,137,646 | + | DVU3021 | 0.41 | -0.9 | |
3,137,654 | - | DVU3021 | 0.42 | +0.1 | |
3,137,683 | + | DVU3021 | 0.44 | +0.2 | |
3,137,720 | + | DVU3021 | 0.46 | +0.0 | |
3,137,728 | - | DVU3021 | 0.47 | -0.1 | |
3,137,768 | - | DVU3021 | 0.50 | +0.5 | |
3,137,846 | + | DVU3021 | 0.56 | -0.1 | |
3,137,862 | - | DVU3021 | 0.57 | -0.1 | |
3,137,888 | - | DVU3021 | 0.59 | -0.9 | |
3,138,103 | - | DVU3021 | 0.74 | +0.1 | |
3,138,119 | - | DVU3021 | 0.75 | -0.1 | |
3,138,119 | - | DVU3021 | 0.75 | +0.1 | |
3,138,156 | - | DVU3021 | 0.78 | -0.1 | |
3,138,161 | + | DVU3021 | 0.78 | +0.6 | |
3,138,167 | + | DVU3021 | 0.79 | +0.9 | |
3,138,169 | - | DVU3021 | 0.79 | -0.9 | |
3,138,175 | - | DVU3021 | 0.80 | -0.0 | |
3,138,175 | - | DVU3021 | 0.80 | -0.1 | |
3,138,241 | - | DVU3021 | 0.84 | -0.0 | |
3,138,272 | + | DVU3021 | 0.87 | -0.3 | |
3,138,280 | - | DVU3021 | 0.87 | +0.4 | |
3,138,402 | + | -0.2 | |||
3,138,461 | + | -0.3 | |||
3,140,668 | - | DVU3022 | 0.63 | -0.8 | |
3,141,829 | + | -0.9 | |||
3,141,918 | - | -0.4 |
Or see this region's nucleotide sequence