Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2957

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflrA and DVU2957 are separated by 109 nucleotidesDVU2957 and DVU2958 overlap by 4 nucleotides DVU2956: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 3,064,162 to 3,065,199 flrA DVU2957: DVU2957 - hypothetical protein (TIGR), at 3,065,309 to 3,065,449 DVU2957 DVU2958: DVU2958 - membrane protein, putative (TIGR), at 3,065,446 to 3,066,444 DVU2958 Position (kb) 3065 3066Strain fitness (log2 ratio) -1 0 1at 3064.715 kb on + strand, within flrAat 3064.779 kb on + strand, within flrAat 3064.907 kb on + strand, within flrAat 3064.921 kb on + strand, within flrAat 3065.029 kb on - strand, within flrAat 3065.289 kb on + strandat 3065.332 kb on - strand, within DVU2957at 3065.494 kb on + strandat 3065.502 kb on - strandat 3066.423 kb on + strandat 3066.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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3,064,715 + flrA DVU2956 0.53 -0.8
3,064,779 + flrA DVU2956 0.59 -0.4
3,064,907 + flrA DVU2956 0.72 -0.3
3,064,921 + flrA DVU2956 0.73 +1.0
3,065,029 - flrA DVU2956 0.84 -0.4
3,065,289 + -0.4
3,065,332 - DVU2957 0.16 +0.3
3,065,494 + -0.2
3,065,502 - -0.2
3,066,423 + -0.2
3,066,423 + +0.2

Or see this region's nucleotide sequence