Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxC and DVU2918 are separated by 132 nucleotides DVU2918 and tRNA-Thr are separated by 512 nucleotides tRNA-Thr and tRNA-Tyr are separated by 6 nucleotides tRNA-Tyr and tRNA-Gly are separated by 57 nucleotides tRNA-Gly and tRNA-Thr are separated by 36 nucleotides tRNA-Thr and tuf are separated by 52 nucleotides
DVU2917: lpxC - UDP-3-0-acyl N-acetylglucosamine deacetylase (TIGR), at 3,017,229 to 3,018,155
lpxC
DVU2918: DVU2918 - hypothetical protein (TIGR), at 3,018,288 to 3,018,524
DVU2918
DVU_tRNA-Thr-3: tRNA-Thr - tRNA with anticodon TGT for Thr (VIMSS-AUTO), at 3,019,037 to 3,019,112
tRNA-Thr
DVU_tRNA-Tyr-1: tRNA-Tyr - tRNA with anticodon GTA for Tyr (VIMSS-AUTO), at 3,019,119 to 3,019,204
tRNA-Tyr
DVU_tRNA-Gly-5: tRNA-Gly - tRNA with anticodon TCC for Gly (VIMSS-AUTO), at 3,019,262 to 3,019,338
tRNA-Gly
DVU_tRNA-Thr-4: tRNA-Thr - tRNA with anticodon GGT for Thr (VIMSS-AUTO), at 3,019,375 to 3,019,450
tRNA-Thr
DVU2920: tuf - translation elongation factor Tu (TIGR), at 3,019,503 to 3,020,696
tuf
Position (kb)
3018
3019 Strain fitness (log2 ratio)
-2
-1
0
1 at 3018.066 kb on - strand at 3018.150 kb on + strand at 3018.191 kb on + strand at 3018.199 kb on + strand at 3018.199 kb on - strand at 3018.227 kb on + strand at 3018.245 kb on + strand at 3018.288 kb on + strand at 3018.296 kb on - strand at 3018.307 kb on + strand at 3018.309 kb on + strand at 3018.317 kb on - strand, within DVU2918 at 3018.333 kb on + strand, within DVU2918 at 3018.341 kb on - strand, within DVU2918 at 3018.421 kb on - strand, within DVU2918 at 3018.436 kb on + strand, within DVU2918 at 3018.436 kb on + strand, within DVU2918 at 3018.436 kb on + strand, within DVU2918 at 3018.444 kb on - strand, within DVU2918 at 3018.444 kb on - strand, within DVU2918 at 3018.528 kb on + strand at 3018.536 kb on - strand at 3018.536 kb on - strand at 3018.575 kb on + strand at 3018.583 kb on - strand at 3018.624 kb on - strand at 3018.624 kb on - strand at 3018.670 kb on - strand at 3018.743 kb on - strand at 3018.760 kb on + strand at 3018.802 kb on + strand at 3018.830 kb on - strand at 3018.830 kb on - strand at 3018.830 kb on - strand at 3018.832 kb on + strand at 3018.840 kb on - strand at 3018.901 kb on + strand at 3018.901 kb on + strand at 3018.909 kb on - strand at 3018.909 kb on - strand at 3018.909 kb on - strand at 3018.909 kb on - strand at 3018.909 kb on - strand at 3019.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 3,018,066 - +0.6 3,018,150 + -1.1 3,018,191 + -0.7 3,018,199 + +0.2 3,018,199 - -0.2 3,018,227 + +0.1 3,018,245 + -0.3 3,018,288 + -0.2 3,018,296 - -0.2 3,018,307 + +0.8 3,018,309 + -0.2 3,018,317 - DVU2918 0.12 -0.2 3,018,333 + DVU2918 0.19 -0.4 3,018,341 - DVU2918 0.22 -1.8 3,018,421 - DVU2918 0.56 -0.2 3,018,436 + DVU2918 0.62 -0.1 3,018,436 + DVU2918 0.62 -0.8 3,018,436 + DVU2918 0.62 +0.4 3,018,444 - DVU2918 0.66 -1.2 3,018,444 - DVU2918 0.66 -0.2 3,018,528 + -0.0 3,018,536 - -0.4 3,018,536 - +0.6 3,018,575 + +0.3 3,018,583 - -0.2 3,018,624 - -0.6 3,018,624 - -0.0 3,018,670 - +0.1 3,018,743 - +0.3 3,018,760 + -0.2 3,018,802 + -0.2 3,018,830 - +0.0 3,018,830 - -1.7 3,018,830 - +0.1 3,018,832 + -0.2 3,018,840 - -0.2 3,018,901 + -0.3 3,018,901 + -0.7 3,018,909 - -0.3 3,018,909 - -0.0 3,018,909 - +0.6 3,018,909 - -0.1 3,018,909 - -0.1 3,019,225 + +0.4
Or see this region's nucleotide sequence